makeGenericArray: Creates an object of class GenericArray

In GenomeGraphs: Plotting genomic information from Ensembl

Description

Creates an object of class Generic Array representing microarray data. This could be gene expression, array CGH, etc.

Usage

makeGenericArray(intensity, probeStart, probeEnd, trackOverlay, dp = NULL)

Arguments

intensity	Matrix of intensities, probes in the rows, samples in the columns
probeStart	Vector of start positions for the probes
probeEnd	Vector of end positions for probes (optional)
trackOverlay	Object of class TrackOverlay, needs to be added if overlays should be plotted as well
dp	Object of class DisplayPars which handles the display parameters for plotting

Value

Object of class GenericArray

Author(s)

Jim Bullard and Steffen Durinck

References

BMC bioinformatics 2009

See Also

gdPlot

Examples

showClass("GenericArray")

GenomeGraphs documentation built on Oct. 31, 2019, 4:34 a.m.