Description Objects from the Class Slots Methods Author(s) References See Also Examples
An ideogram is a representation of a chromosome containing the banding pattern. Note that currently ideograms are only available for hsapiens.
Objects can be created by calls of the form new("Ideogram", ...)
.
chromosome
:Object of class "character"
, representing the chromosome that needs to be drawn. E.g. 3 if chromosome 3 needs to be drawn or Y for Y chromosome.
dp
:Object of class "DisplayPars"
, can be used to specify the size (default 1) of the ideogram in the final plot and to specify the highlighting color
No methods defined with class "Ideogram" in the signature.
Steffen Durinck
http://www.stat.berkeley.edu/~steffen/
objects to See Also as gdPlot
1 2 3 4 5 6 7 8 9 10 | if(interactive()){
data("exampleData", package="GenomeGraphs")
minbase <- 180292097
maxbase <- 180492096
ideog <- new("Ideogram", chromosome = "3")
expres <- new("GenericArray", intensity = intensity, probeStart = exonProbePos,
dp = DisplayPars(color="darkred", type="point"))
gdPlot(list(ideog, expres), minBase = minbase, maxBase =maxbase)
}
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