makeIdeogram: Creates object of class Ideogram

Description Usage Arguments Value Author(s) References See Also Examples

View source: R/GenomeGraphs-classes.R

Description

Creates object of class Ideogram

Usage

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makeIdeogram(chromosome, dp = NULL)

Arguments

chromosome

Chromosome to represent (currently human only)

dp

Display parameters such as color and size

Value

Object of class Ideogram

Author(s)

Jim Bullard and Steffen Durinck

References

~put references to the literature/web site here ~

See Also

gdPlot

Examples

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##---- Should be DIRECTLY executable !! ----
##-- ==>  Define data, use random,
##--	or do  help(data=index)  for the standard data sets.

## The function is currently defined as
function (chromosome, dp = NULL) 
{
    if (missing(chromosome)) 
        stop("Need to specify chromosome for creating an Ideogram")
    if (is.numeric(chromosome)) {
        chromosome = as.character(chromosome)
    }
    if (is.null(dp)) 
        dp <- getClass("Ideogram")@prototype@dp
    new("Ideogram", chromosome = chromosome, dp = dp)
  }

GenomeGraphs documentation built on Oct. 31, 2019, 4:34 a.m.