makeExonArray: Creates and object of class ExonArray
In GenomeGraphs: Plotting genomic information from Ensembl

Description Usage Arguments Value Author(s) References See Also Examples

Creates an object of class ExonArray, representing exon array microarray data

1	makeExonArray(intensity, probeStart, probeEnd, probeId, nProbes, displayProbesets = FALSE, dp = NULL)

`intensity`	Matrix of intentsities, probes in the rows, samples in the columns
`probeStart`	Vector of probe start positions
`probeEnd`	Vector of probe end positions (optional)
`probeId`	Character vector containing the probe identifiers
`nProbes`	Vector indicating how many probes are in each probeset
`displayProbesets`	Logical indicating if the probeset idenifier should be displayed or not
`dp`	Object of class DisplayPars to set the display parameters

Object of ExonArray class

Steffen Durinck and Jim Bullard

~put references to the literature/web site here ~

gdPlot

##---- Should be DIRECTLY executable !! ----
##-- ==>  Define data, use random,
##--	or do  help(data=index)  for the standard data sets.

## The function is currently defined as
function (intensity, probeStart, probeEnd, probeId, nProbes, 
    displayProbesets = FALSE, dp = NULL) 
{
    pt <- getClass("ExonArray")@prototype
    if (is.null(dp)) 
        dp <- pt@dp
    if (missing(probeEnd)) 
        probeEnd <- pt@probeEnd
    if (missing(probeId)) 
        probeId <- pt@probeId
    if (missing(nProbes)) 
        nProbes <- pt@nProbes
    if (is.null(dp)) 
        dp <- getClass("ExonArray")@prototype@dp
    new("ExonArray", intensity = intensity, probeStart = probeStart, 
        probeEnd = probeEnd, probeId = probeId, nProbes = nProbes, 
        displayProbesets = displayProbesets, dp = dp)
  }