unzip_file_system: A utility function to unzip and use example file systems...

In ISAnalytics: Analyze gene therapy vector insertion sites data identified from genomics next generation sequencing reads for clonal tracking studies

Description

This utility function is a simple shortcut to create a temporary directory, unzip and reference the examples file systems included in the package for testing purposes.

Usage

unzip_file_system(zipfile, name)

Arguments

zipfile	The zipped file to decompress
name	The name of the folder in the zipped archive ("fs" or "fserr")

Value

A path to reference

See Also

Other Utility functions: as_sparse_matrix(), generate_Vispa2_launch_AF(), generate_blank_association_file()

Examples

root_pth <- system.file("extdata", "fs.zip", package = "ISAnalytics")
root <- unzip_file_system(root_pth, "fs")

ISAnalytics documentation built on April 9, 2021, 6:01 p.m.