KEGGgraph
KEGGgraph: A graph approach to KEGG PATHWAY in R and Bioconductor

Package index
Search the KEGGgraph package
Vignettes
Functions
187
Source code
14
Man pages
55
Home
/
Bioconductor
/
KEGGgraph: KEGGgraph: A graph approach to KEGG PATHWAY in R and Bioconductor
/
API

API for KEGGgraph
KEGGgraph: A graph approach to KEGG PATHWAY in R and Bioconductor

Global functions
.getComponent Source code
.getEntry1ID Source code
.getEntry2ID Source code
.getEntryID Source code
.getGraphics Source code
.getLink Source code
.getName Source code
.getSubtype Source code
.getTitle Source code Source code
.getType Source code
.getValue Source code
.subtypeDisplay Source code
.xmlChildrenWarningFree Source code
KEGGEdge-class Man page
KEGGEdgeSubType-class Man page
KEGGEdgeSubtype Man page
KEGGEdgeType Man page
KEGGGraphics-class Man page
KEGGGroup-class Man page
KEGGNode-class Man page
KEGGNodeType Man page
KEGGPathway-class Man page
KEGGPathwayInfo-class Man page
KEGGReaction-class Man page
KEGGgraphLegend Man page Source code
KEGGpathway2Graph Man page Source code
KEGGpathway2reactionGraph Man page Source code
edges,KEGGPathway,ANY-method Man page
edges,KEGGPathway-method Man page
edges<- Man page
edges<-,KEGGPathway-method Man page
entryID<- Man page
entryID<-,KEGGEdge-method Man page
entryID<-,KEGGNode-method Man page
expandKEGGNode Man page Source code
expandKEGGPathway Man page Source code
getCategoryIndepKGMLurl Man page Source code
getComponent Man page
getComponent,KEGGGroup-method Man page
getComponent,KEGGNode-method Man page
getDisplayName Man page
getDisplayName,KEGGNode-method Man page
getDisplayName,graph-method Man page
getDisplayName-methods Man page
getEntryID Man page
getEntryID,KEGGEdge-method Man page
getEntryID,KEGGNode-method Man page
getEntryID,list-method Man page
getEntryID-methods Man page
getKEGGID Man page
getKEGGID,KEGGNode-method Man page
getKEGGID-methods Man page
getKEGGedgeData Man page Source code
getKEGGgeneLink Man page
getKEGGgeneLink,character-method Man page
getKEGGgeneLink-methods Man page
getKEGGnodeData Man page Source code
getKGMLurl Man page Source code
getName Man page
getName,KEGGEdge-method Man page
getName,KEGGEdgeSubType-method Man page
getName,KEGGEdgeSubtype-method Man page
getName,KEGGNode-method Man page
getName,KEGGPathway-method Man page
getName,KEGGPathwayInfo-method Man page
getName,KEGGReaction-method Man page
getName-methods Man page
getNamedElement Man page Source code
getPathwayInfo Man page
getPathwayInfo,KEGGPathway-method Man page
getPathwayInfo-methods Man page
getProduct Man page
getProduct,KEGGReaction-method Man page
getReactions Man page
getReactions,KEGGPathway-method Man page
getReactions-methods Man page
getRgraphvizEdgeNames Man page Source code
getSubstrate Man page
getSubstrate,KEGGReaction-method Man page
getSubtype Man page
getSubtype,KEGGEdge-method Man page
getSubtype,graph-method Man page
getSubtype-methods Man page
getTitle Man page
getTitle,KEGGPathway-method Man page Man page
getTitle,KEGGPathwayInfo-method Man page
getTitle-methods Man page
getType Man page
getType,KEGGEdge-method Man page
getType,KEGGNode-method Man page
getType,KEGGReaction-method Man page
getType-methods Man page
getValue Man page
getValue,KEGGEdgeSubType-method Man page
getValue,KEGGEdgeSubtype-method Man page
getValue-methods Man page
graphDensity Man page Source code
isHomoList Man page Source code
kgmlFileName2PathwayName Man page Source code
kgmlNonmetabolicName2MetabolicName Man page Source code
mergeGraphs Man page Source code
mergeKEGGgraphs Man page Source code
name<- Man page
name<-,KEGGNode-method Man page
neighborhood Man page Source code
nodes,KEGGPathway-method Man page
nodes<-,KEGGPathway,ANY-method Man page
parseEntry Man page Source code
parseGraphics Man page Source code
parseKGML Man page Source code
parseKGML2DataFrame Man page Source code
parseKGML2Graph Man page Source code
parseKGMLexpandMaps Man page Source code
parsePathwayInfo Man page Source code
parseReaction Man page Source code
parseRelation Man page Source code
parseSubType Man page Source code
plotKEGGgraph Man page Source code
pvalue2asterisk Man page Source code
queryKEGGsubgraph Man page Source code
randomSubGraph Man page Source code
retrieveKGML Man page Source code
setKEGGedgeData Man page Source code
setKEGGnodeData Man page Source code
show,KEGGEdge-method Man page
show,KEGGEdgeSubType-method Man page
show,KEGGNode-method Man page
show,KEGGPathway-method Man page
show,KEGGPathwayInfo-method Man page
show,KEGGReaction-method Man page
splitKEGGgroup Man page Source code
subGraphByNodeType Man page Source code
subKEGGgraph Man page Source code
subtypeDisplay Man page
subtypeDisplay,KEGGEdge-method Man page
subtypeDisplay,KEGGEdgeSubType-method Man page
subtypeDisplay,graph-method Man page
subtypeDisplay-methods Man page
top Man page
translateGeneID2KEGGID Man page Source code
translateKEGG2GeneID Man page Source code
translateKEGGID2GeneID Man page Source code
translateKEGGgraph Man page Source code
KEGGgraph documentation built on Nov. 8, 2020, 5:42 p.m.

R Package Documentation

rdrr.io home R language documentation Run R code online

Browse R Packages

CRAN packages Bioconductor packages R-Forge packages GitHub packages

We want your feedback!

Note that we can't provide technical support on individual packages. You should contact the package authors for that.
GitHub issue tracker
ian@mutexlabs.com
Personal blog

 
Embedding an R snippet on your website

Add the following code to your website.

For more information on customizing the embed code, read Embedding Snippets.

Close