splitKEGGgroup: Split KEGG group
In KEGGgraph: KEGGgraph: A graph approach to KEGG PATHWAY in R and Bioconductor
Description
Usage
Arguments
Details
Value
Author(s)
References
See Also
Examples
Description
The function split 'group' entries in KGML files. Most of the cases
they are complexes. During the splitting the function copies the edges
between groups and nodes (or between groups and groups)
correspondingly, so that the existing edges also exist after the
groups are split.
Usage
1
splitKEGGgroup(pathway)
Arguments
pathway
An object of KEGGPathway-class
Details
By default the groups (complexes) in KEGG pathways are split.
Value
An object of KEGGPathway-class
Author(s)
Jitao David Zhang mailto:jitao_david.zhang@roche.com
References
KGML Manual http://www.genome.jp/kegg/docs/xml/
See Also
Examples
1
2
3
4
5
6
7
sfile <- system.file("extdata/hsa04010.xml",package="KEGGgraph")
kegg.pathway <- parseKGML(sfile)
kegg.pathway.split <- splitKEGGgroup(kegg.pathway)
## compare the different number of edges
length(edges(kegg.pathway))
length(edges(kegg.pathway.split))
KEGGgraph documentation built on Nov. 8, 2020, 5:42 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Details Value Author(s) References See Also Examples
Description
The function split 'group' entries in KGML files. Most of the cases they are complexes. During the splitting the function copies the edges between groups and nodes (or between groups and groups) correspondingly, so that the existing edges also exist after the groups are split.
Usage
1 | splitKEGGgroup(pathway)
|
Arguments
pathway |
An object of |
Details
By default the groups (complexes) in KEGG pathways are split.
Value
An object of KEGGPathway-class
Author(s)
Jitao David Zhang mailto:jitao_david.zhang@roche.com
References
KGML Manual http://www.genome.jp/kegg/docs/xml/
See Also
Examples
1 2 3 4 5 6 7 | sfile <- system.file("extdata/hsa04010.xml",package="KEGGgraph")
kegg.pathway <- parseKGML(sfile)
kegg.pathway.split <- splitKEGGgroup(kegg.pathway)
## compare the different number of edges
length(edges(kegg.pathway))
length(edges(kegg.pathway.split))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.