parseKGML: KGML file parser

In KEGGgraph: KEGGgraph: A graph approach to KEGG PATHWAY in R and Bioconductor

Description

The function parses KGML files according to the KGML XML documentation.

Usage

parseKGML(file)

Arguments

file	Name of KGML file

Details

The function parses KGML file (depending on XML package).

Value

An object of KEGGPathway-class.

Author(s)

Jitao David Zhang mailto:[e-mail]

References

KGML Manual http://www.genome.jp/kegg/docs/xml/

See Also

parseEntry, parseRelation, parseReaction, KEGGPathway-class,

Examples

sfile <- system.file("extdata/hsa04010.xml",package="KEGGgraph")
kegg.pathway <- parseKGML(sfile)
kegg.pathway

Example output

Attaching package: 'KEGGgraph'

The following object is masked from 'package:graphics':

    plot

KEGG Pathway
[ Title ]: MAPK signaling pathway
[ Name ]: path:hsa04010
[ Organism ]: hsa
[ Number ] :04010
[ Image ] :http://www.genome.jp/kegg/pathway/hsa/hsa04010.gif
[ Link ] :http://www.genome.jp/dbget-bin/show_pathway?hsa04010
------------------------------------------------------------
Statistics:
	136 node(s)
	171 edge(s)
	0 reaction(s)
------------------------------------------------------------

KEGGgraph documentation built on Nov. 8, 2020, 5:42 p.m.