parseKGML: KGML file parser

Description Usage Arguments Details Value Author(s) References See Also Examples

View source: R/parse.R

Description

The function parses KGML files according to the KGML XML documentation.

Usage

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Arguments

file

Name of KGML file

Details

The function parses KGML file (depending on XML package).

Value

An object of KEGGPathway-class.

Author(s)

Jitao David Zhang mailto:[email protected]

References

KGML Manual http://www.genome.jp/kegg/docs/xml/

See Also

parseEntry, parseRelation, parseReaction, KEGGPathway-class,

Examples

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sfile <- system.file("extdata/hsa04010.xml",package="KEGGgraph")
kegg.pathway <- parseKGML(sfile)
kegg.pathway

KEGGgraph documentation built on Nov. 17, 2017, 9:01 a.m.