KEGGPathwayInfo-class: Class "KEGGPathwayInfo"

In KEGGgraph: KEGGgraph: A graph approach to KEGG PATHWAY in R and Bioconductor

Description

A class to represent information of a KEGG pathway

Objects from the Class

Objects can be created by calls of the function parsePathwayInfo.

Slots

name:

Object of class "character" Pathway name

org:

Object of class "character" Organism

number:

Object of class "character" Number

title:

Object of class "character" Title of the pathway

image:

Object of class "character" Image URL

link:

Object of class "character" URL Link

Methods

getTitle

signature(object = "KEGGPathwayInfo"): get title of the pathway

show

signature(object = "KEGGPathwayInfo"): show method

Author(s)

Jitao David Zhang mailto:[e-mail]

References

KGML Document Manual http://www.genome.jp/kegg/docs/xml/

Examples

sfile <- system.file("extdata/hsa04010.xml",package="KEGGgraph")
pathway <- parseKGML(sfile)
pi <- getPathwayInfo(pathway)

class(pi)

getTitle(pi)

Example output

Attaching package: 'KEGGgraph'

The following object is masked from 'package:graphics':

    plot

[1] "KEGGPathwayInfo"
attr(,"package")
[1] "KEGGgraph"
[1] "MAPK signaling pathway"

KEGGgraph documentation built on Nov. 8, 2020, 5:42 p.m.