The class to present 'entry' element in KGML files and nodes in KEGG graphs
Objects can be created by calls of the function
and is not intended to be directly created by users.
entryID, the 'id' attribute of 'entry'
elements in KGML files. In each KGML file the entryID is specified
by auto-increment integers, therefore entryIDs from two individual
KGML files are not unique. However, if 'expandGenes' option is
KEGGpathway2Graph function, the unique
KEGGID will replace the default integer as the new entryID, which is
unique in biological context
Name of the node
Type of the node, use
to see available values
URL link of the node
Reaction of the node
Map of the node
Graphic details (including display name) of
the node, an object of
signature(object = "KEGGNode"): get
signature(obj = "KEGGNode"): get entryID,
in case of gene-expanded graphs this is the same as getKEGGID
signature(object = "KEGGNode"): get KEGGID
signature(object = "KEGGNode"): get the type of
signature(object = "KEGGNode"): replace name
signature(obj = "KEGGNode"): returns
entryID (the same as
getEntryID), for compatibility with
signature(object = "KEGGNode"): show method
Jitao David Zhang mailto:[email protected]
KGML Document manual http://www.genome.jp/kegg/docs/xml/
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