Files in KEGGgraph
KEGGgraph: A graph approach to KEGG PATHWAY in R and Bioconductor
ChangeLog
NEWS
NAMESPACE
DESCRIPTION
build/vignette.rds
data/KEGGNodeType.csv
data/KEGGEdgeSubtype.csv
data/KEGGEdgeType.csv
data/colorectalcancerSPIA.RData
R/misc.R
R/parse.R
R/vis.R
R/kgmlfile.R
R/kegg2graph-functions.R
R/annotation.R
R/graph.R
vignettes/KEGGgraph.Rnw
vignettes/KEGGgraphApp.Rnw
man/KEGGReaction-class.Rd
man/KEGGGraphics-class.Rd
man/getReactions-methods.Rd
man/translateKEGGID2GeneID.Rd
man/neighborhood.Rd
man/randomSubGraph.Rd
man/KEGGPathwayInfo-class.Rd
man/parseKGML.Rd
man/parsePathwayInfo.Rd
man/getValue-methods.Rd
man/isHomoList.Rd
man/expandKEGGNode.Rd
man/top.Rd
man/kgmlFileName2PathwayName.Rd
man/getSubtype-methods.Rd
man/subGraphByNodeType.Rd
man/splitKEGGgroup.Rd
man/getKEGGID-methods.Rd
man/parseSubType.Rd
man/queryKEGGsubgraph.Rd
man/pvalue2asterisk.Rd
man/parseGraphics.Rd
man/parseKGML2DataFrame.Rd
man/KEGGGroup-class.Rd
man/getEntryID-methods.Rd
man/KEGGPathway-class.Rd
man/getKEGGgeneLink-methods.Rd
man/parseKGMLexpandMaps.Rd
man/getKGMLurl.Rd
man/KEGGNode-class.Rd
man/parseRelation.Rd
man/getKEGGnodeData.Rd
man/getType-methods.Rd
man/parseEntry.Rd
man/getRgraphvizEdgeNames.Rd
man/subtypeDisplay-methods.Rd
man/getNamedElement.Rd
man/getPathwayInfo-methods.Rd
man/KEGGpathway2Graph.Rd
man/mergeKEGGgraphs.Rd
man/expandKEGGPathway.Rd
man/graphDensity.Rd
man/KEGGEdge-class.Rd
man/KEGGEdgeSubtype.Rd
man/KEGGEdgeSubType-class.Rd
man/getName-methods.Rd
man/subKEGGgraph.Rd
man/translateKEGGgraph.Rd
man/KEGGpathway2reactionGraph.Rd
man/getTitle-methods.Rd
man/parseKGML2Graph.Rd
man/getDisplayName-methods.Rd
man/parseReaction.Rd
man/plotKEGGgraph.Rd
man/mergeGraphs.Rd
tests/testthat.R
tests/kegg2graph.R
tests/testthat/test_reactionsAsDataFrame.R
tests/testthat/test_KEGGgraph.R
tests/testthat/testGraph.R
inst/CITATION
inst/doc/KEGGgraph.Rnw
inst/doc/KEGGgraphApp.R
inst/doc/KEGGgraphApp.pdf
inst/doc/KEGGgraphApp.Rnw
inst/doc/KEGGgraph.pdf
inst/doc/KEGGgraph.R
inst/extdata/hsa05212.xml
inst/extdata/hsa04012.xml
inst/extdata/hsa00020.xml
inst/extdata/ko00051.xml
inst/extdata/hsa04350.xml
inst/extdata/hsa04370.xml
inst/extdata/hsa04630.xml
inst/extdata/hsa04310.xml
inst/extdata/hsa04115.xml
inst/extdata/hsa05210.xml
inst/extdata/hsa04010.xml
inst/extdata/hsa04210.xml
inst/extdata/hsa04110.xml
inst/extdata/map00260.xml
inst/extdata/kgml-ed-toy.xml
inst/extdata/hsa00062.xml
