kgmlFileName2PathwayName: Convert KGML file name to pathway name
In KEGGgraph: KEGGgraph: A graph approach to KEGG PATHWAY in R and Bioconductor

Description Usage Arguments Details Value Author(s)

The function uses KEGG package and converts KGML file name into human readable pathway name.

1	kgmlFileName2PathwayName(filename)

filename

A KGML file name

So far it only supports KGML files organized by species.

NOTE: there is issue of package loading sequence to use this function: the 'KEGG.db' must be loaded before 'KEGGgraph' to use it properly. Otherwise the mget returns error of 'KEGGPATHID2NAME' is not a environment. So far I don't where does this bug come from, so I commented out the examples.

A character string of pathway name

Jitao David Zhang mailto:jitao_david.zhang@roche.com

KEGGgraph documentation built on Nov. 8, 2020, 5:42 p.m.