Get KEGG ID

Description

Get KEGGID from a KEGGNode-class object.

The KEGGNode-class can be either another pathway (KEGGID in the form like 'hsa\d*'), KEGG Gene ('hsa:\d*') or compound ('cpd:C\d*'). In case of the KEGG Gene ID, the organism prefix is removed when the value is returned.

Methods

object = "KEGGNode"

An object of KEGGNode-class

Examples

1
2
3
4
5
wntfile <- system.file("extdata/hsa04310.xml",package="KEGGgraph")
wnt <- parseKGML(wntfile)
nodes <- nodes(wnt)
getKEGGID(nodes[[1]])
getKEGGID(nodes[[26]])

Want to suggest features or report bugs for rdrr.io? Use the GitHub issue tracker.