Expand KEGG Pathway

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Description

The function expands paralogue nodes in KEGG pathway and returns expanded KEGG pathway, KEGG node and edge data is maintained.

Usage

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Arguments

pathway

An object of KEGGPathway-class

Details

The function expands nodes with paralogues in KEGG pathway and copy neccessary edges.

Value

An object of KEGGPathway-class

Author(s)

Jitao David Zhang mailto:jitao_david.zhang@roche.com

See Also

expandKEGGNode

Examples

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sfile <- system.file("extdata/hsa04010.xml",package="KEGGgraph")
kegg.pathway <- parseKGML(sfile)
kegg.expandpathway <- expandKEGGPathway(kegg.pathway)

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