GSE6008: Lysophosphatidic acid-induced transcriptional profile...
In MetaGxOvarian: Transcriptomic Ovarian Cancer Datasets
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Description
Lysophosphatidic acid (LPA) governs a number of physiologic and pathophysiological processes. Malignant ascites fluid is rich in LPA, and LPA receptors are aberrantly expressed by ovarian cancer cells, implicating LPA in the initiation and progression of ovarian cancer. However, there is an absence of systematic data critically analyzing the transcriptional changes induced by LPA in ovarian cancer.In this study, gene expression profiling was used to examine LPA-mediated transcription by exogenously adding LPA to human epithelial ovarian cancer cells for 24 h to mimic long-term stimulation in the tumor microenvironment. The resultant transcriptional profile comprised a 39-gene signature that closely correlated to serous epithelial ovarian carcinoma. Hierarchical clustering of ovarian cancer patient specimens demonstrated that the signature is associated with worsened prognosis. Patients with LPA-signature-positive ovarian tumors have reduced disease-specific and progression-free survival times. They have a higher frequency of stage IIIc serous carcinoma and a greater proportion is deceased. Among the 39-gene signature, a group of seven genes associated with cell adhesion recapitulated the results. Out of those seven, claudin-1, an adhesion molecule and phenotypic epithelial marker, is the only independent biomarker of serous epithelial ovarian carcinoma. Knockdown of claudin-1 expression in ovarian cancer cells reduces LPA-mediated cellular adhesion, enhances suspended cells and reduces LPA-mediated migration.The data suggest that transcriptional events mediated by LPA in the tumor microenvironment influence tumor progression through modulation of cell adhesion molecules like claudin-1 and, for the first time, report an LPA-mediated expression signature in ovarian cancer that predicts a worse prognosis.
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experimentData(eset):
Experiment data
Experimenter name: Murph MM, Liu W, Yu S, Lu Y, Hall H, Hennessy BT, Lahad J, Schaner M, Helland A, Kristensen G, Brresen-Dale AL, Mills GB. Lysophosphatidic acid-induced transcriptional profile represents serous epithelial ovarian carcinoma and worsened prognosis. PLoS One. 2009; 4(5):e5583.
Laboratory: Murph, Mills 2009
Contact information:
Title: Lysophosphatidic acid-induced transcriptional profile represents serous epithelial ovarian carcinoma and worsened prognosis.
URL:
PMIDs: 19440550
Abstract: A 247 word abstract is available. Use 'abstract' method.
Information is available on: preprocessing
notes:
platform_title:
[HG-U133A] Affymetrix Human Genome U133A Array
platform_shorttitle:
Affymetrix HG-U133A
platform_summary:
hgu133a
platform_manufacturer:
Affymetrix
platform_distribution:
commercial
platform_accession:
GPL96
version:
2015-09-22 20:07:11
featureData(eset):
An object of class 'AnnotatedDataFrame'
featureNames: 1007_s_at 1053_at ... AFFX-HUMISGF3A/M97935_MB_at
(20967 total)
varLabels: probeset gene EntrezGene.ID best_probe
varMetadata: labelDescription
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assayData: 20967 features, 103 samples
Platform type:
---------------------------
Available sample meta-data:
---------------------------
alt_sample_name:
Ovarian_Tumor_ClearCell_CHTN-OC-004 Ovarian_Tumor_ClearCell_CHTN-OC-012
1 1
Ovarian_Tumor_ClearCell_CHTN-OC-028 Ovarian_Tumor_ClearCell_KU-OC-003
1 1
Ovarian_Tumor_ClearCell_KU-OC-004 Ovarian_Tumor_ClearCell_KU-OC-005
1 1
Ovarian_Tumor_ClearCell_KU-OC-006 Ovarian_Tumor_ClearCell_KU-OC-007
1 1
Ovarian_Tumor_Endometrioid_CHTN-OE-005 Ovarian_Tumor_Endometrioid_CHTN-OE-011
1 1
Ovarian_Tumor_Endometrioid_CHTN-OE-014 Ovarian_Tumor_Endometrioid_CHTN-OE-017
1 1
Ovarian_Tumor_Endometrioid_CHTN-OE-018 Ovarian_Tumor_Endometrioid_CHTN-OE-019
1 1
Ovarian_Tumor_Endometrioid_CHTN-OE-023 Ovarian_Tumor_Endometrioid_CHTN-OE-029
1 1
Ovarian_Tumor_Endometrioid_CHTN-OE-033 Ovarian_Tumor_Endometrioid_CHTN-OE-035
1 1
Ovarian_Tumor_Endometrioid_CHTN-OE-036 Ovarian_Tumor_Endometrioid_CHTN-OE-038
1 1
Ovarian_Tumor_Endometrioid_CHTN-OE-039 Ovarian_Tumor_Endometrioid_CHTN-OE-040
1 1
Ovarian_Tumor_Endometrioid_CHTN-OE-042 Ovarian_Tumor_Endometrioid_CHTN-OE-046
1 1
Ovarian_Tumor_Endometrioid_CHTN-OE-047 Ovarian_Tumor_Endometrioid_CHTN-OE-048
1 1
Ovarian_Tumor_Endometrioid_CHTN-OE-053 Ovarian_Tumor_Endometrioid_CHTN-OE-054
1 1
Ovarian_Tumor_Endometrioid_CHTN-OE-056 Ovarian_Tumor_Endometrioid_CHTN-OE-059
1 1
Ovarian_Tumor_Endometrioid_CHTN-OE-060 Ovarian_Tumor_Endometrioid_CHTN-OE-061
1 1
Ovarian_Tumor_Endometrioid_CHTN-OE-065 Ovarian_Tumor_Endometrioid_CHTN-OE-069
1 1
Ovarian_Tumor_Endometrioid_CHTN-OE-076 Ovarian_Tumor_Endometrioid_CHTN-OE-077
1 1
Ovarian_Tumor_Endometrioid_CHTN-OE-080 Ovarian_Tumor_Endometrioid_CHTN-OE-082
1 1
Ovarian_Tumor_Endometrioid_CHTN-OE-087 Ovarian_Tumor_Endometrioid_CHTN-OE-092
1 1
Ovarian_Tumor_Endometrioid_JH-OE-2T Ovarian_Tumor_Endometrioid_KU-OE-003
1 1
Ovarian_Tumor_Endometrioid_KU-OE-004 Ovarian_Tumor_Endometrioid_KU-OE-007
1 1
Ovarian_Tumor_Endometrioid_UM-OE-1T Ovarian_Tumor_Mucinous_CHTN-OM-007
1 1
Ovarian_Tumor_Mucinous_CHTN-OM-017 Ovarian_Tumor_Mucinous_CHTN-OM-023
1 1
Ovarian_Tumor_Mucinous_CHTN-OM-029 Ovarian_Tumor_Mucinous_CHTN-OM-032
1 1
Ovarian_Tumor_Mucinous_CHTN-OM-035 Ovarian_Tumor_Mucinous_CHTN-OM-036
1 1
Ovarian_Tumor_Mucinous_KU-OM-003 Ovarian_Tumor_Mucinous_KU-OM-004
1 1
Ovarian_Tumor_Mucinous_KU-OM-006 Ovarian_Tumor_Mucinous_KU-OM-007
1 1
Ovarian_Tumor_Mucinous_UM-OM-01 Ovarian_Tumor_Mucinous_UM-OM-03
1 1
Ovarian_Tumor_Serous_CHTN-OS-002 Ovarian_Tumor_Serous_CHTN-OS-003
1 1
Ovarian_Tumor_Serous_CHTN-OS-009 Ovarian_Tumor_Serous_CHTN-OS-010
1 1
Ovarian_Tumor_Serous_CHTN-OS-011 Ovarian_Tumor_Serous_CHTN-OS-018
1 1
Ovarian_Tumor_Serous_CHTN-OS-020 Ovarian_Tumor_Serous_CHTN-OS-029
1 1
Ovarian_Tumor_Serous_CHTN-OS-038 Ovarian_Tumor_Serous_CHTN-OS-041
1 1
Ovarian_Tumor_Serous_CHTN-OS-044 Ovarian_Tumor_Serous_CHTN-OS-046
1 1
Ovarian_Tumor_Serous_CHTN-OS-048 Ovarian_Tumor_Serous_CHTN-OS-053
1 1
Ovarian_Tumor_Serous_CHTN-OS-055 Ovarian_Tumor_Serous_CHTN-OS-068
1 1
Ovarian_Tumor_Serous_CHTN-OS-072 Ovarian_Tumor_Serous_CHTN-OS-081
1 1
Ovarian_Tumor_Serous_CHTN-OS-089 Ovarian_Tumor_Serous_CHTN-OS-093
1 1
Ovarian_Tumor_Serous_CHTN-OS-098 Ovarian_Tumor_Serous_CU-OS-04
1 1
Ovarian_Tumor_Serous_CU-OS-05 Ovarian_Tumor_Serous_KU-OS-001
1 1
Ovarian_Tumor_Serous_KU-OS-002 Ovarian_Tumor_Serous_KU-OS-003
1 1
Ovarian_Tumor_Serous_KU-OS-005 Ovarian_Tumor_Serous_KU-OS-007
1 1
Ovarian_Tumor_Serous_KU-OS-009 Ovarian_Tumor_Serous_KU-OS-011
1 1
Ovarian_Tumor_Serous_KU-OS-012 Ovarian_Tumor_Serous_KU-OS-013
1 1
Ovarian_Tumor_Serous_KU-OS-015 Ovarian_Tumor_Serous_KU-OS-018
1 1
Ovarian_Tumor_Serous_KU-OS-021 Ovarian_Tumor_Serous_KU-OS-022
1 1
Ovarian_Tumor_Serous_UM-OS-02 Ovarian_Tumor_Serous_UM-OS-07
1 1
Ovarian_Tumor_Serous_UM-OS-09 Ovarian_Tumor_Serous_UM-OS-10
1 1
Ovarian_Tumor_Serous_UM-OS-11 (Other)
1 4
sample_type:
healthy tumor
4 99
histological_type:
clearcell endo mucinous ser NA's
8 37 13 41 4
primarysite:
ov
103
summarygrade:
high low NA's
38 36 29
summarystage:
early late NA's
42 53 8
tumorstage:
1 2 3 4 NA's
35 11 44 9 4
substage:
a b c d NA's
19 2 54 1 27
grade:
1 2 3 NA's
19 17 38 29
batch:
2002-04-03 2002-04-04 2002-04-09 2002-04-10 2002-04-12 2002-08-13 2002-08-15
3 8 9 2 3 4 4
2002-08-22 2002-08-23 2002-08-27 2002-08-28 2002-08-29 2002-08-30 2002-09-11
8 8 5 6 16 14 9
2006-01-27
4
uncurated_author_metadata:
title: Ovarian_Tumor_ClearCell_CHTN-OC-004///geo_accession: GSM139377///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Clear_Cell///characteristics_ch1.1: stage: 3C///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OC-004.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: clear cell///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139377/GSM139377.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_ClearCell_CHTN-OC-012///geo_accession: GSM139378///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Clear_Cell///characteristics_ch1.1: stage: 4///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OC-012.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: clear cell///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139378/GSM139378.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_ClearCell_CHTN-OC-028///geo_accession: GSM139379///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Clear_Cell///characteristics_ch1.1: stage: 1///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OC-028.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: clear cell///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139379/GSM139379.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_ClearCell_KU-OC-003///geo_accession: GSM139380///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Clear_Cell///characteristics_ch1.1: stage: 1a///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: KU-OC-003.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: clear cell///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139380/GSM139380.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_ClearCell_KU-OC-004///geo_accession: GSM139381///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Clear_Cell///characteristics_ch1.1: stage: 2c///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: KU-OC-004.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: clear cell///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139381/GSM139381.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_ClearCell_KU-OC-005///geo_accession: GSM139382///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Clear_Cell///characteristics_ch1.1: stage: 1a///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: KU-OC-005.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: clear cell///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139382/GSM139382.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_ClearCell_KU-OC-006///geo_accession: GSM139383///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Clear_Cell///characteristics_ch1.1: stage: 1a///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: KU-OC-006.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: clear cell///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139383/GSM139383.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_ClearCell_KU-OC-007///geo_accession: GSM139384///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Clear_Cell///characteristics_ch1.1: stage: 1c///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: KU-OC-007.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: clear cell///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139384/GSM139384.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_CHTN-OE-005///geo_accession: GSM139385///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 4///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: N///characteristics_ch1.11: P53_immunohistochemistry: present///characteristics_ch1.12: CEL_file_name: CHTN-OE-005.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139385/GSM139385.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_CHTN-OE-011///geo_accession: GSM139386///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 1A///characteristics_ch1.2: grade: 1///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: Y///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: Y///characteristics_ch1.7: PTEN_immunohistochemistry: absent///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: Y///characteristics_ch1.11: P53_immunohistochemistry: absent///characteristics_ch1.12: CEL_file_name: CHTN-OE-011.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139386/GSM139386.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_CHTN-OE-014///geo_accession: GSM139387///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 4///characteristics_ch1.2: grade: 2///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: N///characteristics_ch1.11: P53_immunohistochemistry: present///characteristics_ch1.12: CEL_file_name: CHTN-OE-014.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139387/GSM139387.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_CHTN-OE-017///geo_accession: GSM139388///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 2A///characteristics_ch1.2: grade: 2///characteristics_ch1.3: B-canenin_nuclear_accumulation: Y///characteristics_ch1.4: CTNNB1_mutation: Y///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: absent///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: N///characteristics_ch1.11: P53_immunohistochemistry: absent///characteristics_ch1.12: CEL_file_name: CHTN-OE-017.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139388/GSM139388.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_CHTN-OE-018///geo_accession: GSM139389///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 3C///characteristics_ch1.2: grade: 2-3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: Y///characteristics_ch1.7: PTEN_immunohistochemistry: absent///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: Y///characteristics_ch1.10: TP53_mutation: N///characteristics_ch1.11: P53_immunohistochemistry: absent///characteristics_ch1.12: CEL_file_name: CHTN-OE-018.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139389/GSM139389.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_CHTN-OE-019///geo_accession: GSM139390///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 1A///characteristics_ch1.2: grade: 1///characteristics_ch1.3: B-canenin_nuclear_accumulation: Y///characteristics_ch1.4: CTNNB1_mutation: Y///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: absent///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: N///characteristics_ch1.11: P53_immunohistochemistry: absent///characteristics_ch1.12: CEL_file_name: CHTN-OE-019.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139390/GSM139390.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_CHTN-OE-023///geo_accession: GSM139391///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 1C///characteristics_ch1.2: grade: 1///characteristics_ch1.3: B-canenin_nuclear_accumulation: Y///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: Y///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: absent///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N///characteristics_ch1.11: P53_immunohistochemistry: absent///characteristics_ch1.12: CEL_file_name: CHTN-OE-023.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139391/GSM139391.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_CHTN-OE-029///geo_accession: GSM139392///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 1c///characteristics_ch1.2: grade: 1///characteristics_ch1.3: B-canenin_nuclear_accumulation: Y///characteristics_ch1.4: CTNNB1_mutation: Y///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: Y///characteristics_ch1.7: PTEN_immunohistochemistry: absent///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: N///characteristics_ch1.11: P53_immunohistochemistry: absent///characteristics_ch1.12: CEL_file_name: CHTN-OE-029.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139392/GSM139392.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_CHTN-OE-033///geo_accession: GSM139393///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 3C///characteristics_ch1.2: grade: 1///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: Y///characteristics_ch1.11: P53_immunohistochemistry: present///characteristics_ch1.12: CEL_file_name: CHTN-OE-033.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139393/GSM139393.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_CHTN-OE-035///geo_accession: GSM139394///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 1///characteristics_ch1.2: grade: 2///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: N///characteristics_ch1.11: P53_immunohistochemistry: absent///characteristics_ch1.12: CEL_file_name: CHTN-OE-035.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139394/GSM139394.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_CHTN-OE-036///geo_accession: GSM139395///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 3///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: absent///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: Y///characteristics_ch1.11: P53_immunohistochemistry: present///characteristics_ch1.12: CEL_file_name: CHTN-OE-036.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139395/GSM139395.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_CHTN-OE-038///geo_accession: GSM139396///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 1C///characteristics_ch1.2: grade: 2///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: Y///characteristics_ch1.11: P53_immunohistochemistry: present///characteristics_ch1.12: CEL_file_name: CHTN-OE-038.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139396/GSM139396.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_CHTN-OE-039///geo_accession: GSM139397///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 1A///characteristics_ch1.2: grade: 2///characteristics_ch1.3: B-canenin_nuclear_accumulation: Y///characteristics_ch1.4: CTNNB1_mutation: Y///characteristics_ch1.5: APC_mutation: N///characteristics_ch1.6: PTEN_mutation: Y///characteristics_ch1.7: PTEN_immunohistochemistry: absent///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: N///characteristics_ch1.11: P53_immunohistochemistry: absent///characteristics_ch1.12: CEL_file_name: CHTN-OE-039.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139397/GSM139397.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_CHTN-OE-040///geo_accession: GSM139398///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 4///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: Y///characteristics_ch1.11: P53_immunohistochemistry: present///characteristics_ch1.12: CEL_file_name: CHTN-OE-040.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139398/GSM139398.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_CHTN-OE-042///geo_accession: GSM139399///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 1C///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: N///characteristics_ch1.11: P53_immunohistochemistry: absent///characteristics_ch1.12: CEL_file_name: CHTN-OE-042.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139399/GSM139399.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_CHTN-OE-046///geo_accession: GSM139400///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 1C///characteristics_ch1.2: grade: 2///characteristics_ch1.3: B-canenin_nuclear_accumulation: Y///characteristics_ch1.4: CTNNB1_mutation: Y///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: N///characteristics_ch1.11: P53_immunohistochemistry: absent///characteristics_ch1.12: CEL_file_name: CHTN-OE-046.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139400/GSM139400.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_CHTN-OE-047///geo_accession: GSM139401///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 2B///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: N///characteristics_ch1.11: P53_immunohistochemistry: absent///characteristics_ch1.12: CEL_file_name: CHTN-OE-047.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139401/GSM139401.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_CHTN-OE-048///geo_accession: GSM139402///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 1A///characteristics_ch1.2: grade: 1///characteristics_ch1.3: B-canenin_nuclear_accumulation: Y///characteristics_ch1.4: CTNNB1_mutation: Y///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: N///characteristics_ch1.11: P53_immunohistochemistry: absent///characteristics_ch1.12: CEL_file_name: CHTN-OE-048.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139402/GSM139402.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_CHTN-OE-053///geo_accession: GSM139403///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 1///characteristics_ch1.2: grade: 1///characteristics_ch1.3: B-canenin_nuclear_accumulation: Y///characteristics_ch1.4: CTNNB1_mutation: Y///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: N///characteristics_ch1.11: P53_immunohistochemistry: absent///characteristics_ch1.12: CEL_file_name: CHTN-OE-053.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139403/GSM139403.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_CHTN-OE-054///geo_accession: GSM139404///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 3///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: Y///characteristics_ch1.11: P53_immunohistochemistry: absent///characteristics_ch1.12: CEL_file_name: CHTN-OE-054.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139404/GSM139404.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_CHTN-OE-056///geo_accession: GSM139405///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 2A///characteristics_ch1.2: grade: 2///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: Y///characteristics_ch1.11: P53_immunohistochemistry: present///characteristics_ch1.12: CEL_file_name: CHTN-OE-056.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139405/GSM139405.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_CHTN-OE-059///geo_accession: GSM139406///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 1A///characteristics_ch1.2: grade: 2-3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: Y///characteristics_ch1.11: P53_immunohistochemistry: present///characteristics_ch1.12: CEL_file_name: CHTN-OE-059.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139406/GSM139406.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_CHTN-OE-060///geo_accession: GSM139407///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 3C///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: Y///characteristics_ch1.11: P53_immunohistochemistry: present///characteristics_ch1.12: CEL_file_name: CHTN-OE-060.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139407/GSM139407.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_CHTN-OE-061///geo_accession: GSM139408///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 2C///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: Y///characteristics_ch1.11: P53_immunohistochemistry: present///characteristics_ch1.12: CEL_file_name: CHTN-OE-061.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139408/GSM139408.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_CHTN-OE-065///geo_accession: GSM139409///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 2A///characteristics_ch1.2: grade: 2///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: Y///characteristics_ch1.7: PTEN_immunohistochemistry: absent///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: N///characteristics_ch1.11: P53_immunohistochemistry: absent///characteristics_ch1.12: CEL_file_name: CHTN-OE-065.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139409/GSM139409.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_CHTN-OE-069///geo_accession: GSM139410///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 3C///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: N///characteristics_ch1.11: P53_immunohistochemistry: absent///characteristics_ch1.12: CEL_file_name: CHTN-OE-069.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139410/GSM139410.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_CHTN-OE-076///geo_accession: GSM139411///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 1///characteristics_ch1.2: grade: 1///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: N///characteristics_ch1.11: P53_immunohistochemistry: absent///characteristics_ch1.12: CEL_file_name: CHTN-OE-076.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139411/GSM139411.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_CHTN-OE-077///geo_accession: GSM139412///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 3C///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: Y///characteristics_ch1.11: P53_immunohistochemistry: absent///characteristics_ch1.12: CEL_file_name: CHTN-OE-077.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139412/GSM139412.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_CHTN-OE-080///geo_accession: GSM139413///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 3///characteristics_ch1.2: grade: 2///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: N///characteristics_ch1.11: P53_immunohistochemistry: absent///characteristics_ch1.12: CEL_file_name: CHTN-OE-080.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139413/GSM139413.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_CHTN-OE-082///geo_accession: GSM139414///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 3///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: N///characteristics_ch1.11: P53_immunohistochemistry: absent///characteristics_ch1.12: CEL_file_name: CHTN-OE-082.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139414/GSM139414.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_CHTN-OE-087///geo_accession: GSM139415///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 1A///characteristics_ch1.2: grade: 1///characteristics_ch1.3: B-canenin_nuclear_accumulation: Y///characteristics_ch1.4: CTNNB1_mutation: Y///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: Y///characteristics_ch1.7: PTEN_immunohistochemistry: absent///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: Y///characteristics_ch1.10: TP53_mutation: N///characteristics_ch1.11: P53_immunohistochemistry: absent///characteristics_ch1.12: CEL_file_name: CHTN-OE-087.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139415/GSM139415.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_CHTN-OE-092///geo_accession: GSM139416///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 3///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: Y///characteristics_ch1.11: P53_immunohistochemistry: present///characteristics_ch1.12: CEL_file_name: CHTN-OE-092.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139416/GSM139416.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_JH-OE-2T///geo_accession: GSM139417///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 1///characteristics_ch1.2: grade: 1///characteristics_ch1.3: B-canenin_nuclear_accumulation: Y///characteristics_ch1.4: CTNNB1_mutation: Y///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: absent///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: N///characteristics_ch1.11: P53_immunohistochemistry: absent///characteristics_ch1.12: CEL_file_name: JH-OE-2T.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139417/GSM139417.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_KU-OE-003///geo_accession: GSM139418///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 1C///characteristics_ch1.2: grade: 2///characteristics_ch1.3: B-canenin_nuclear_accumulation: Y///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: absent///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: Y///characteristics_ch1.11: P53_immunohistochemistry: present///characteristics_ch1.12: CEL_file_name: KU-OE-003.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139418/GSM139418.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_KU-OE-004///geo_accession: GSM139419///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 3C///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: Y///characteristics_ch1.11: P53_immunohistochemistry: present///characteristics_ch1.12: CEL_file_name: KU-OE-004.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139419/GSM139419.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_KU-OE-007///geo_accession: GSM139420///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 1C///characteristics_ch1.2: grade: 1///characteristics_ch1.3: B-canenin_nuclear_accumulation: Y///characteristics_ch1.4: CTNNB1_mutation: Y///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: Y///characteristics_ch1.11: P53_immunohistochemistry: present///characteristics_ch1.12: CEL_file_name: KU-OE-007.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139420/GSM139420.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_UM-OE-1T///geo_accession: GSM139421///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 1C///characteristics_ch1.2: grade: 2///characteristics_ch1.3: B-canenin_nuclear_accumulation: Y///characteristics_ch1.4: CTNNB1_mutation: Y///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: Y///characteristics_ch1.10: TP53_mutation: N///characteristics_ch1.11: P53_immunohistochemistry: absent///characteristics_ch1.12: CEL_file_name: UM-OE-1T.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139421/GSM139421.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Mucinous_CHTN-OM-007///geo_accession: GSM139422///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Mucinous///characteristics_ch1.1: stage: 2C///characteristics_ch1.2: grade: 2-3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OM-007.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: mucinous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139422/GSM139422.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Mucinous_CHTN-OM-017///geo_accession: GSM139423///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Mucinous///characteristics_ch1.1: stage: 1A///characteristics_ch1.2: grade: 1///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OM-017.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: mucinous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139423/GSM139423.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Mucinous_CHTN-OM-023///geo_accession: GSM139424///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Mucinous///characteristics_ch1.1: stage: 3///characteristics_ch1.2: grade: 2-3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OM-023.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: mucinous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139424/GSM139424.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Mucinous_CHTN-OM-029///geo_accession: GSM139425///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Mucinous///characteristics_ch1.1: stage: 1A///characteristics_ch1.2: grade: 1///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OM-029.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: mucinous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139425/GSM139425.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Mucinous_CHTN-OM-032///geo_accession: GSM139426///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Mucinous///characteristics_ch1.1: stage: 1A///characteristics_ch1.2: grade: 1///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OM-032.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: mucinous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139426/GSM139426.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Mucinous_CHTN-OM-035///geo_accession: GSM139427///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Mucinous///characteristics_ch1.1: stage: 1A///characteristics_ch1.2: grade: 1///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OM-035.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: mucinous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139427/GSM139427.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Mucinous_CHTN-OM-036///geo_accession: GSM139428///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Mucinous///characteristics_ch1.1: stage: 3C///characteristics_ch1.2: grade: 1///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OM-036.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: mucinous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139428/GSM139428.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Mucinous_KU-OM-003///geo_accession: GSM139429///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Mucinous///characteristics_ch1.1: stage: I c///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: KU-OM-003.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: mucinous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139429/GSM139429.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Mucinous_KU-OM-004///geo_accession: GSM139430///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Mucinous///characteristics_ch1.1: stage: I c///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: KU-OM-004.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: mucinous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139430/GSM139430.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Mucinous_KU-OM-006///geo_accession: GSM139431///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Mucinous///characteristics_ch1.1: stage: I a///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: KU-OM-006.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: mucinous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139431/GSM139431.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Mucinous_KU-OM-007///geo_accession: GSM139432///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Mucinous///characteristics_ch1.1: stage: I c///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: KU-OM-007.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: mucinous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139432/GSM139432.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Mucinous_UM-OM-01///geo_accession: GSM139433///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Mucinous///characteristics_ch1.1: stage: 3c///characteristics_ch1.2: grade: 2///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: UM-OM-01.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: mucinous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139433/GSM139433.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Mucinous_UM-OM-03///geo_accession: GSM139434///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Mucinous///characteristics_ch1.1: stage: 2a///characteristics_ch1.2: grade: 1///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: UM-OM-03.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: mucinous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139434/GSM139434.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_CHTN-OS-002///geo_accession: GSM139435///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3C///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OS-002.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139435/GSM139435.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_CHTN-OS-003///geo_accession: GSM139436///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 4///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OS-003.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139436/GSM139436.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_CHTN-OS-009///geo_accession: GSM139437///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3C///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OS-009.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139437/GSM139437.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_CHTN-OS-010///geo_accession: GSM139438///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3C///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OS-010.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139438/GSM139438.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_CHTN-OS-011///geo_accession: GSM139439///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3B///characteristics_ch1.2: grade: 2///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OS-011.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139439/GSM139439.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_CHTN-OS-018///geo_accession: GSM139440///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3C///characteristics_ch1.2: grade: 2///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OS-018.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139440/GSM139440.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_CHTN-OS-020///geo_accession: GSM139441///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3C///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OS-020.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139441/GSM139441.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_CHTN-OS-029///geo_accession: GSM139442///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3C///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OS-029.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139442/GSM139442.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_CHTN-OS-038///geo_accession: GSM139443///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3C///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OS-038.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139443/GSM139443.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_CHTN-OS-041///geo_accession: GSM139444///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 1C///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OS-041.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139444/GSM139444.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_CHTN-OS-044///geo_accession: GSM139445///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 4///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OS-044.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139445/GSM139445.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_CHTN-OS-046///geo_accession: GSM139446///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 2C///characteristics_ch1.2: grade: 2///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OS-046.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139446/GSM139446.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_CHTN-OS-048///geo_accession: GSM139447///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 4///characteristics_ch1.2: grade: 2///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OS-048.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139447/GSM139447.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_CHTN-OS-053///geo_accession: GSM139448///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3D///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OS-053.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139448/GSM139448.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_CHTN-OS-055///geo_accession: GSM139449///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3C///characteristics_ch1.2: grade: 1///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OS-055.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139449/GSM139449.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_CHTN-OS-068///geo_accession: GSM139450///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3C///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OS-068.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139450/GSM139450.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_CHTN-OS-072///geo_accession: GSM139451///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3C///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OS-072.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139451/GSM139451.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_CHTN-OS-081///geo_accession: GSM139452///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3C///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OS-081.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139452/GSM139452.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_CHTN-OS-089///geo_accession: GSM139453///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3C///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OS-089.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139453/GSM139453.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_CHTN-OS-093///geo_accession: GSM139454///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3C///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OS-093.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139454/GSM139454.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_CHTN-OS-098///geo_accession: GSM139455///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 1A///characteristics_ch1.2: grade: 2///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OS-098.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139455/GSM139455.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_CU-OS-04///geo_accession: GSM139456///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CU-OS-04.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139456/GSM139456.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_CU-OS-05///geo_accession: GSM139457///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 2///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CU-OS-05.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139457/GSM139457.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_KU-OS-001///geo_accession: GSM139458///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 4///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: KU-OS-001.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139458/GSM139458.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_KU-OS-002///geo_accession: GSM139459///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 4///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: KU-OS-002.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139459/GSM139459.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_KU-OS-003///geo_accession: GSM139460///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3c///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: KU-OS-003.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139460/GSM139460.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_KU-OS-005///geo_accession: GSM139461///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3c///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: KU-OS-005.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139461/GSM139461.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_KU-OS-007///geo_accession: GSM139462///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3c///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: KU-OS-007.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139462/GSM139462.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_KU-OS-009///geo_accession: GSM139463///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3c///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: KU-OS-009.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139463/GSM139463.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_KU-OS-011///geo_accession: GSM139464///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 1c///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: KU-OS-011.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139464/GSM139464.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_KU-OS-012///geo_accession: GSM139465///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 2c///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: KU-OS-012.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139465/GSM139465.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_KU-OS-013///geo_accession: GSM139466///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3c///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: KU-OS-013.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139466/GSM139466.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_KU-OS-015///geo_accession: GSM139467///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3c///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: KU-OS-015.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139467/GSM139467.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_KU-OS-018///geo_accession: GSM139468///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 1c///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: KU-OS-018.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139468/GSM139468.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_KU-OS-021///geo_accession: GSM139469///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3c///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: KU-OS-021.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139469/GSM139469.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_KU-OS-022///geo_accession: GSM139470///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3c///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: KU-OS-022.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139470/GSM139470.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_UM-OS-02///geo_accession: GSM139471///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3c///characteristics_ch1.2: grade: 2-3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: UM-OS-02.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139471/GSM139471.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_UM-OS-07///geo_accession: GSM139472///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3c///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: UM-OS-07.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139472/GSM139472.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_UM-OS-09///geo_accession: GSM139473///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3c///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: UM-OS-09.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139473/GSM139473.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_UM-OS-10///geo_accession: GSM139474///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3///characteristics_ch1.2: grade: 1///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: UM-OS-10.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139474/GSM139474.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_UM-OS-11///geo_accession: GSM139475///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3c///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: UM-OS-11.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139475/GSM139475.CEL.gz///data_row_count: 22283
1
(Other)
4
duplicates:
GSE6008.GSE6008_GSM139476///GSE6008.GSE6008_GSM139477
1
GSE6008.GSE6008_GSM139476///GSE6008.GSE6008_GSM139478
1
GSE6008.GSE6008_GSM139477///GSE6008.GSE6008_GSM139478
1
NA's
100
Value
An expression set
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Description Format Details Value
Description
Lysophosphatidic acid (LPA) governs a number of physiologic and pathophysiological processes. Malignant ascites fluid is rich in LPA, and LPA receptors are aberrantly expressed by ovarian cancer cells, implicating LPA in the initiation and progression of ovarian cancer. However, there is an absence of systematic data critically analyzing the transcriptional changes induced by LPA in ovarian cancer.In this study, gene expression profiling was used to examine LPA-mediated transcription by exogenously adding LPA to human epithelial ovarian cancer cells for 24 h to mimic long-term stimulation in the tumor microenvironment. The resultant transcriptional profile comprised a 39-gene signature that closely correlated to serous epithelial ovarian carcinoma. Hierarchical clustering of ovarian cancer patient specimens demonstrated that the signature is associated with worsened prognosis. Patients with LPA-signature-positive ovarian tumors have reduced disease-specific and progression-free survival times. They have a higher frequency of stage IIIc serous carcinoma and a greater proportion is deceased. Among the 39-gene signature, a group of seven genes associated with cell adhesion recapitulated the results. Out of those seven, claudin-1, an adhesion molecule and phenotypic epithelial marker, is the only independent biomarker of serous epithelial ovarian carcinoma. Knockdown of claudin-1 expression in ovarian cancer cells reduces LPA-mediated cellular adhesion, enhances suspended cells and reduces LPA-mediated migration.The data suggest that transcriptional events mediated by LPA in the tumor microenvironment influence tumor progression through modulation of cell adhesion molecules like claudin-1 and, for the first time, report an LPA-mediated expression signature in ovarian cancer that predicts a worse prognosis.
Format
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 | experimentData(eset):
Experiment data
Experimenter name: Murph MM, Liu W, Yu S, Lu Y, Hall H, Hennessy BT, Lahad J, Schaner M, Helland A, Kristensen G, Brresen-Dale AL, Mills GB. Lysophosphatidic acid-induced transcriptional profile represents serous epithelial ovarian carcinoma and worsened prognosis. PLoS One. 2009; 4(5):e5583.
Laboratory: Murph, Mills 2009
Contact information:
Title: Lysophosphatidic acid-induced transcriptional profile represents serous epithelial ovarian carcinoma and worsened prognosis.
URL:
PMIDs: 19440550
Abstract: A 247 word abstract is available. Use 'abstract' method.
Information is available on: preprocessing
notes:
platform_title:
[HG-U133A] Affymetrix Human Genome U133A Array
platform_shorttitle:
Affymetrix HG-U133A
platform_summary:
hgu133a
platform_manufacturer:
Affymetrix
platform_distribution:
commercial
platform_accession:
GPL96
version:
2015-09-22 20:07:11
featureData(eset):
An object of class 'AnnotatedDataFrame'
featureNames: 1007_s_at 1053_at ... AFFX-HUMISGF3A/M97935_MB_at
(20967 total)
varLabels: probeset gene EntrezGene.ID best_probe
varMetadata: labelDescription
|
Details
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 | assayData: 20967 features, 103 samples
Platform type:
---------------------------
Available sample meta-data:
---------------------------
alt_sample_name:
Ovarian_Tumor_ClearCell_CHTN-OC-004 Ovarian_Tumor_ClearCell_CHTN-OC-012
1 1
Ovarian_Tumor_ClearCell_CHTN-OC-028 Ovarian_Tumor_ClearCell_KU-OC-003
1 1
Ovarian_Tumor_ClearCell_KU-OC-004 Ovarian_Tumor_ClearCell_KU-OC-005
1 1
Ovarian_Tumor_ClearCell_KU-OC-006 Ovarian_Tumor_ClearCell_KU-OC-007
1 1
Ovarian_Tumor_Endometrioid_CHTN-OE-005 Ovarian_Tumor_Endometrioid_CHTN-OE-011
1 1
Ovarian_Tumor_Endometrioid_CHTN-OE-014 Ovarian_Tumor_Endometrioid_CHTN-OE-017
1 1
Ovarian_Tumor_Endometrioid_CHTN-OE-018 Ovarian_Tumor_Endometrioid_CHTN-OE-019
1 1
Ovarian_Tumor_Endometrioid_CHTN-OE-023 Ovarian_Tumor_Endometrioid_CHTN-OE-029
1 1
Ovarian_Tumor_Endometrioid_CHTN-OE-033 Ovarian_Tumor_Endometrioid_CHTN-OE-035
1 1
Ovarian_Tumor_Endometrioid_CHTN-OE-036 Ovarian_Tumor_Endometrioid_CHTN-OE-038
1 1
Ovarian_Tumor_Endometrioid_CHTN-OE-039 Ovarian_Tumor_Endometrioid_CHTN-OE-040
1 1
Ovarian_Tumor_Endometrioid_CHTN-OE-042 Ovarian_Tumor_Endometrioid_CHTN-OE-046
1 1
Ovarian_Tumor_Endometrioid_CHTN-OE-047 Ovarian_Tumor_Endometrioid_CHTN-OE-048
1 1
Ovarian_Tumor_Endometrioid_CHTN-OE-053 Ovarian_Tumor_Endometrioid_CHTN-OE-054
1 1
Ovarian_Tumor_Endometrioid_CHTN-OE-056 Ovarian_Tumor_Endometrioid_CHTN-OE-059
1 1
Ovarian_Tumor_Endometrioid_CHTN-OE-060 Ovarian_Tumor_Endometrioid_CHTN-OE-061
1 1
Ovarian_Tumor_Endometrioid_CHTN-OE-065 Ovarian_Tumor_Endometrioid_CHTN-OE-069
1 1
Ovarian_Tumor_Endometrioid_CHTN-OE-076 Ovarian_Tumor_Endometrioid_CHTN-OE-077
1 1
Ovarian_Tumor_Endometrioid_CHTN-OE-080 Ovarian_Tumor_Endometrioid_CHTN-OE-082
1 1
Ovarian_Tumor_Endometrioid_CHTN-OE-087 Ovarian_Tumor_Endometrioid_CHTN-OE-092
1 1
Ovarian_Tumor_Endometrioid_JH-OE-2T Ovarian_Tumor_Endometrioid_KU-OE-003
1 1
Ovarian_Tumor_Endometrioid_KU-OE-004 Ovarian_Tumor_Endometrioid_KU-OE-007
1 1
Ovarian_Tumor_Endometrioid_UM-OE-1T Ovarian_Tumor_Mucinous_CHTN-OM-007
1 1
Ovarian_Tumor_Mucinous_CHTN-OM-017 Ovarian_Tumor_Mucinous_CHTN-OM-023
1 1
Ovarian_Tumor_Mucinous_CHTN-OM-029 Ovarian_Tumor_Mucinous_CHTN-OM-032
1 1
Ovarian_Tumor_Mucinous_CHTN-OM-035 Ovarian_Tumor_Mucinous_CHTN-OM-036
1 1
Ovarian_Tumor_Mucinous_KU-OM-003 Ovarian_Tumor_Mucinous_KU-OM-004
1 1
Ovarian_Tumor_Mucinous_KU-OM-006 Ovarian_Tumor_Mucinous_KU-OM-007
1 1
Ovarian_Tumor_Mucinous_UM-OM-01 Ovarian_Tumor_Mucinous_UM-OM-03
1 1
Ovarian_Tumor_Serous_CHTN-OS-002 Ovarian_Tumor_Serous_CHTN-OS-003
1 1
Ovarian_Tumor_Serous_CHTN-OS-009 Ovarian_Tumor_Serous_CHTN-OS-010
1 1
Ovarian_Tumor_Serous_CHTN-OS-011 Ovarian_Tumor_Serous_CHTN-OS-018
1 1
Ovarian_Tumor_Serous_CHTN-OS-020 Ovarian_Tumor_Serous_CHTN-OS-029
1 1
Ovarian_Tumor_Serous_CHTN-OS-038 Ovarian_Tumor_Serous_CHTN-OS-041
1 1
Ovarian_Tumor_Serous_CHTN-OS-044 Ovarian_Tumor_Serous_CHTN-OS-046
1 1
Ovarian_Tumor_Serous_CHTN-OS-048 Ovarian_Tumor_Serous_CHTN-OS-053
1 1
Ovarian_Tumor_Serous_CHTN-OS-055 Ovarian_Tumor_Serous_CHTN-OS-068
1 1
Ovarian_Tumor_Serous_CHTN-OS-072 Ovarian_Tumor_Serous_CHTN-OS-081
1 1
Ovarian_Tumor_Serous_CHTN-OS-089 Ovarian_Tumor_Serous_CHTN-OS-093
1 1
Ovarian_Tumor_Serous_CHTN-OS-098 Ovarian_Tumor_Serous_CU-OS-04
1 1
Ovarian_Tumor_Serous_CU-OS-05 Ovarian_Tumor_Serous_KU-OS-001
1 1
Ovarian_Tumor_Serous_KU-OS-002 Ovarian_Tumor_Serous_KU-OS-003
1 1
Ovarian_Tumor_Serous_KU-OS-005 Ovarian_Tumor_Serous_KU-OS-007
1 1
Ovarian_Tumor_Serous_KU-OS-009 Ovarian_Tumor_Serous_KU-OS-011
1 1
Ovarian_Tumor_Serous_KU-OS-012 Ovarian_Tumor_Serous_KU-OS-013
1 1
Ovarian_Tumor_Serous_KU-OS-015 Ovarian_Tumor_Serous_KU-OS-018
1 1
Ovarian_Tumor_Serous_KU-OS-021 Ovarian_Tumor_Serous_KU-OS-022
1 1
Ovarian_Tumor_Serous_UM-OS-02 Ovarian_Tumor_Serous_UM-OS-07
1 1
Ovarian_Tumor_Serous_UM-OS-09 Ovarian_Tumor_Serous_UM-OS-10
1 1
Ovarian_Tumor_Serous_UM-OS-11 (Other)
1 4
sample_type:
healthy tumor
4 99
histological_type:
clearcell endo mucinous ser NA's
8 37 13 41 4
primarysite:
ov
103
summarygrade:
high low NA's
38 36 29
summarystage:
early late NA's
42 53 8
tumorstage:
1 2 3 4 NA's
35 11 44 9 4
substage:
a b c d NA's
19 2 54 1 27
grade:
1 2 3 NA's
19 17 38 29
batch:
2002-04-03 2002-04-04 2002-04-09 2002-04-10 2002-04-12 2002-08-13 2002-08-15
3 8 9 2 3 4 4
2002-08-22 2002-08-23 2002-08-27 2002-08-28 2002-08-29 2002-08-30 2002-09-11
8 8 5 6 16 14 9
2006-01-27
4
uncurated_author_metadata:
title: Ovarian_Tumor_ClearCell_CHTN-OC-004///geo_accession: GSM139377///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Clear_Cell///characteristics_ch1.1: stage: 3C///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OC-004.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: clear cell///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139377/GSM139377.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_ClearCell_CHTN-OC-012///geo_accession: GSM139378///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Clear_Cell///characteristics_ch1.1: stage: 4///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OC-012.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: clear cell///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139378/GSM139378.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_ClearCell_CHTN-OC-028///geo_accession: GSM139379///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Clear_Cell///characteristics_ch1.1: stage: 1///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OC-028.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: clear cell///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139379/GSM139379.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_ClearCell_KU-OC-003///geo_accession: GSM139380///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Clear_Cell///characteristics_ch1.1: stage: 1a///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: KU-OC-003.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: clear cell///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139380/GSM139380.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_ClearCell_KU-OC-004///geo_accession: GSM139381///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Clear_Cell///characteristics_ch1.1: stage: 2c///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: KU-OC-004.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: clear cell///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139381/GSM139381.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_ClearCell_KU-OC-005///geo_accession: GSM139382///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Clear_Cell///characteristics_ch1.1: stage: 1a///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: KU-OC-005.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: clear cell///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139382/GSM139382.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_ClearCell_KU-OC-006///geo_accession: GSM139383///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Clear_Cell///characteristics_ch1.1: stage: 1a///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: KU-OC-006.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: clear cell///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139383/GSM139383.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_ClearCell_KU-OC-007///geo_accession: GSM139384///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Clear_Cell///characteristics_ch1.1: stage: 1c///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: KU-OC-007.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: clear cell///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139384/GSM139384.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_CHTN-OE-005///geo_accession: GSM139385///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 4///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: N///characteristics_ch1.11: P53_immunohistochemistry: present///characteristics_ch1.12: CEL_file_name: CHTN-OE-005.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139385/GSM139385.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_CHTN-OE-011///geo_accession: GSM139386///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 1A///characteristics_ch1.2: grade: 1///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: Y///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: Y///characteristics_ch1.7: PTEN_immunohistochemistry: absent///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: Y///characteristics_ch1.11: P53_immunohistochemistry: absent///characteristics_ch1.12: CEL_file_name: CHTN-OE-011.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139386/GSM139386.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_CHTN-OE-014///geo_accession: GSM139387///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 4///characteristics_ch1.2: grade: 2///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: N///characteristics_ch1.11: P53_immunohistochemistry: present///characteristics_ch1.12: CEL_file_name: CHTN-OE-014.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139387/GSM139387.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_CHTN-OE-017///geo_accession: GSM139388///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 2A///characteristics_ch1.2: grade: 2///characteristics_ch1.3: B-canenin_nuclear_accumulation: Y///characteristics_ch1.4: CTNNB1_mutation: Y///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: absent///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: N///characteristics_ch1.11: P53_immunohistochemistry: absent///characteristics_ch1.12: CEL_file_name: CHTN-OE-017.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139388/GSM139388.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_CHTN-OE-018///geo_accession: GSM139389///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 3C///characteristics_ch1.2: grade: 2-3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: Y///characteristics_ch1.7: PTEN_immunohistochemistry: absent///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: Y///characteristics_ch1.10: TP53_mutation: N///characteristics_ch1.11: P53_immunohistochemistry: absent///characteristics_ch1.12: CEL_file_name: CHTN-OE-018.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139389/GSM139389.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_CHTN-OE-019///geo_accession: GSM139390///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 1A///characteristics_ch1.2: grade: 1///characteristics_ch1.3: B-canenin_nuclear_accumulation: Y///characteristics_ch1.4: CTNNB1_mutation: Y///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: absent///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: N///characteristics_ch1.11: P53_immunohistochemistry: absent///characteristics_ch1.12: CEL_file_name: CHTN-OE-019.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139390/GSM139390.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_CHTN-OE-023///geo_accession: GSM139391///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 1C///characteristics_ch1.2: grade: 1///characteristics_ch1.3: B-canenin_nuclear_accumulation: Y///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: Y///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: absent///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N///characteristics_ch1.11: P53_immunohistochemistry: absent///characteristics_ch1.12: CEL_file_name: CHTN-OE-023.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139391/GSM139391.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_CHTN-OE-029///geo_accession: GSM139392///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 1c///characteristics_ch1.2: grade: 1///characteristics_ch1.3: B-canenin_nuclear_accumulation: Y///characteristics_ch1.4: CTNNB1_mutation: Y///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: Y///characteristics_ch1.7: PTEN_immunohistochemistry: absent///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: N///characteristics_ch1.11: P53_immunohistochemistry: absent///characteristics_ch1.12: CEL_file_name: CHTN-OE-029.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139392/GSM139392.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_CHTN-OE-033///geo_accession: GSM139393///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 3C///characteristics_ch1.2: grade: 1///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: Y///characteristics_ch1.11: P53_immunohistochemistry: present///characteristics_ch1.12: CEL_file_name: CHTN-OE-033.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139393/GSM139393.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_CHTN-OE-035///geo_accession: GSM139394///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 1///characteristics_ch1.2: grade: 2///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: N///characteristics_ch1.11: P53_immunohistochemistry: absent///characteristics_ch1.12: CEL_file_name: CHTN-OE-035.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139394/GSM139394.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_CHTN-OE-036///geo_accession: GSM139395///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 3///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: absent///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: Y///characteristics_ch1.11: P53_immunohistochemistry: present///characteristics_ch1.12: CEL_file_name: CHTN-OE-036.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139395/GSM139395.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_CHTN-OE-038///geo_accession: GSM139396///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 1C///characteristics_ch1.2: grade: 2///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: Y///characteristics_ch1.11: P53_immunohistochemistry: present///characteristics_ch1.12: CEL_file_name: CHTN-OE-038.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139396/GSM139396.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_CHTN-OE-039///geo_accession: GSM139397///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 1A///characteristics_ch1.2: grade: 2///characteristics_ch1.3: B-canenin_nuclear_accumulation: Y///characteristics_ch1.4: CTNNB1_mutation: Y///characteristics_ch1.5: APC_mutation: N///characteristics_ch1.6: PTEN_mutation: Y///characteristics_ch1.7: PTEN_immunohistochemistry: absent///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: N///characteristics_ch1.11: P53_immunohistochemistry: absent///characteristics_ch1.12: CEL_file_name: CHTN-OE-039.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139397/GSM139397.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_CHTN-OE-040///geo_accession: GSM139398///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 4///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: Y///characteristics_ch1.11: P53_immunohistochemistry: present///characteristics_ch1.12: CEL_file_name: CHTN-OE-040.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139398/GSM139398.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_CHTN-OE-042///geo_accession: GSM139399///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 1C///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: N///characteristics_ch1.11: P53_immunohistochemistry: absent///characteristics_ch1.12: CEL_file_name: CHTN-OE-042.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139399/GSM139399.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_CHTN-OE-046///geo_accession: GSM139400///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 1C///characteristics_ch1.2: grade: 2///characteristics_ch1.3: B-canenin_nuclear_accumulation: Y///characteristics_ch1.4: CTNNB1_mutation: Y///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: N///characteristics_ch1.11: P53_immunohistochemistry: absent///characteristics_ch1.12: CEL_file_name: CHTN-OE-046.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139400/GSM139400.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_CHTN-OE-047///geo_accession: GSM139401///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 2B///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: N///characteristics_ch1.11: P53_immunohistochemistry: absent///characteristics_ch1.12: CEL_file_name: CHTN-OE-047.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139401/GSM139401.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_CHTN-OE-048///geo_accession: GSM139402///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 1A///characteristics_ch1.2: grade: 1///characteristics_ch1.3: B-canenin_nuclear_accumulation: Y///characteristics_ch1.4: CTNNB1_mutation: Y///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: N///characteristics_ch1.11: P53_immunohistochemistry: absent///characteristics_ch1.12: CEL_file_name: CHTN-OE-048.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139402/GSM139402.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_CHTN-OE-053///geo_accession: GSM139403///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 1///characteristics_ch1.2: grade: 1///characteristics_ch1.3: B-canenin_nuclear_accumulation: Y///characteristics_ch1.4: CTNNB1_mutation: Y///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: N///characteristics_ch1.11: P53_immunohistochemistry: absent///characteristics_ch1.12: CEL_file_name: CHTN-OE-053.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139403/GSM139403.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_CHTN-OE-054///geo_accession: GSM139404///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 3///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: Y///characteristics_ch1.11: P53_immunohistochemistry: absent///characteristics_ch1.12: CEL_file_name: CHTN-OE-054.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139404/GSM139404.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_CHTN-OE-056///geo_accession: GSM139405///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 2A///characteristics_ch1.2: grade: 2///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: Y///characteristics_ch1.11: P53_immunohistochemistry: present///characteristics_ch1.12: CEL_file_name: CHTN-OE-056.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139405/GSM139405.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_CHTN-OE-059///geo_accession: GSM139406///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 1A///characteristics_ch1.2: grade: 2-3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: Y///characteristics_ch1.11: P53_immunohistochemistry: present///characteristics_ch1.12: CEL_file_name: CHTN-OE-059.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139406/GSM139406.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_CHTN-OE-060///geo_accession: GSM139407///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 3C///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: Y///characteristics_ch1.11: P53_immunohistochemistry: present///characteristics_ch1.12: CEL_file_name: CHTN-OE-060.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139407/GSM139407.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_CHTN-OE-061///geo_accession: GSM139408///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 2C///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: Y///characteristics_ch1.11: P53_immunohistochemistry: present///characteristics_ch1.12: CEL_file_name: CHTN-OE-061.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139408/GSM139408.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_CHTN-OE-065///geo_accession: GSM139409///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 2A///characteristics_ch1.2: grade: 2///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: Y///characteristics_ch1.7: PTEN_immunohistochemistry: absent///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: N///characteristics_ch1.11: P53_immunohistochemistry: absent///characteristics_ch1.12: CEL_file_name: CHTN-OE-065.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139409/GSM139409.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_CHTN-OE-069///geo_accession: GSM139410///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 3C///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: N///characteristics_ch1.11: P53_immunohistochemistry: absent///characteristics_ch1.12: CEL_file_name: CHTN-OE-069.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139410/GSM139410.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_CHTN-OE-076///geo_accession: GSM139411///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 1///characteristics_ch1.2: grade: 1///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: N///characteristics_ch1.11: P53_immunohistochemistry: absent///characteristics_ch1.12: CEL_file_name: CHTN-OE-076.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139411/GSM139411.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_CHTN-OE-077///geo_accession: GSM139412///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 3C///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: Y///characteristics_ch1.11: P53_immunohistochemistry: absent///characteristics_ch1.12: CEL_file_name: CHTN-OE-077.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139412/GSM139412.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_CHTN-OE-080///geo_accession: GSM139413///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 3///characteristics_ch1.2: grade: 2///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: N///characteristics_ch1.11: P53_immunohistochemistry: absent///characteristics_ch1.12: CEL_file_name: CHTN-OE-080.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139413/GSM139413.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_CHTN-OE-082///geo_accession: GSM139414///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 3///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: N///characteristics_ch1.11: P53_immunohistochemistry: absent///characteristics_ch1.12: CEL_file_name: CHTN-OE-082.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139414/GSM139414.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_CHTN-OE-087///geo_accession: GSM139415///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 1A///characteristics_ch1.2: grade: 1///characteristics_ch1.3: B-canenin_nuclear_accumulation: Y///characteristics_ch1.4: CTNNB1_mutation: Y///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: Y///characteristics_ch1.7: PTEN_immunohistochemistry: absent///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: Y///characteristics_ch1.10: TP53_mutation: N///characteristics_ch1.11: P53_immunohistochemistry: absent///characteristics_ch1.12: CEL_file_name: CHTN-OE-087.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139415/GSM139415.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_CHTN-OE-092///geo_accession: GSM139416///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 3///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: Y///characteristics_ch1.11: P53_immunohistochemistry: present///characteristics_ch1.12: CEL_file_name: CHTN-OE-092.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139416/GSM139416.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_JH-OE-2T///geo_accession: GSM139417///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 1///characteristics_ch1.2: grade: 1///characteristics_ch1.3: B-canenin_nuclear_accumulation: Y///characteristics_ch1.4: CTNNB1_mutation: Y///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: absent///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: N///characteristics_ch1.11: P53_immunohistochemistry: absent///characteristics_ch1.12: CEL_file_name: JH-OE-2T.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139417/GSM139417.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_KU-OE-003///geo_accession: GSM139418///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 1C///characteristics_ch1.2: grade: 2///characteristics_ch1.3: B-canenin_nuclear_accumulation: Y///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: absent///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: Y///characteristics_ch1.11: P53_immunohistochemistry: present///characteristics_ch1.12: CEL_file_name: KU-OE-003.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139418/GSM139418.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_KU-OE-004///geo_accession: GSM139419///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 3C///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: Y///characteristics_ch1.11: P53_immunohistochemistry: present///characteristics_ch1.12: CEL_file_name: KU-OE-004.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139419/GSM139419.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_KU-OE-007///geo_accession: GSM139420///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 1C///characteristics_ch1.2: grade: 1///characteristics_ch1.3: B-canenin_nuclear_accumulation: Y///characteristics_ch1.4: CTNNB1_mutation: Y///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: Y///characteristics_ch1.11: P53_immunohistochemistry: present///characteristics_ch1.12: CEL_file_name: KU-OE-007.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139420/GSM139420.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Endometrioid_UM-OE-1T///geo_accession: GSM139421///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 1C///characteristics_ch1.2: grade: 2///characteristics_ch1.3: B-canenin_nuclear_accumulation: Y///characteristics_ch1.4: CTNNB1_mutation: Y///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: Y///characteristics_ch1.10: TP53_mutation: N///characteristics_ch1.11: P53_immunohistochemistry: absent///characteristics_ch1.12: CEL_file_name: UM-OE-1T.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139421/GSM139421.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Mucinous_CHTN-OM-007///geo_accession: GSM139422///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Mucinous///characteristics_ch1.1: stage: 2C///characteristics_ch1.2: grade: 2-3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OM-007.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: mucinous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139422/GSM139422.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Mucinous_CHTN-OM-017///geo_accession: GSM139423///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Mucinous///characteristics_ch1.1: stage: 1A///characteristics_ch1.2: grade: 1///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OM-017.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: mucinous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139423/GSM139423.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Mucinous_CHTN-OM-023///geo_accession: GSM139424///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Mucinous///characteristics_ch1.1: stage: 3///characteristics_ch1.2: grade: 2-3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OM-023.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: mucinous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139424/GSM139424.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Mucinous_CHTN-OM-029///geo_accession: GSM139425///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Mucinous///characteristics_ch1.1: stage: 1A///characteristics_ch1.2: grade: 1///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OM-029.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: mucinous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139425/GSM139425.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Mucinous_CHTN-OM-032///geo_accession: GSM139426///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Mucinous///characteristics_ch1.1: stage: 1A///characteristics_ch1.2: grade: 1///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OM-032.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: mucinous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139426/GSM139426.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Mucinous_CHTN-OM-035///geo_accession: GSM139427///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Mucinous///characteristics_ch1.1: stage: 1A///characteristics_ch1.2: grade: 1///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OM-035.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: mucinous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139427/GSM139427.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Mucinous_CHTN-OM-036///geo_accession: GSM139428///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Mucinous///characteristics_ch1.1: stage: 3C///characteristics_ch1.2: grade: 1///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OM-036.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: mucinous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139428/GSM139428.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Mucinous_KU-OM-003///geo_accession: GSM139429///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Mucinous///characteristics_ch1.1: stage: I c///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: KU-OM-003.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: mucinous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139429/GSM139429.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Mucinous_KU-OM-004///geo_accession: GSM139430///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Mucinous///characteristics_ch1.1: stage: I c///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: KU-OM-004.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: mucinous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139430/GSM139430.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Mucinous_KU-OM-006///geo_accession: GSM139431///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Mucinous///characteristics_ch1.1: stage: I a///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: KU-OM-006.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: mucinous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139431/GSM139431.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Mucinous_KU-OM-007///geo_accession: GSM139432///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Mucinous///characteristics_ch1.1: stage: I c///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: KU-OM-007.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: mucinous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139432/GSM139432.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Mucinous_UM-OM-01///geo_accession: GSM139433///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Mucinous///characteristics_ch1.1: stage: 3c///characteristics_ch1.2: grade: 2///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: UM-OM-01.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: mucinous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139433/GSM139433.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Mucinous_UM-OM-03///geo_accession: GSM139434///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Mucinous///characteristics_ch1.1: stage: 2a///characteristics_ch1.2: grade: 1///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: UM-OM-03.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: mucinous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139434/GSM139434.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_CHTN-OS-002///geo_accession: GSM139435///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3C///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OS-002.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139435/GSM139435.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_CHTN-OS-003///geo_accession: GSM139436///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 4///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OS-003.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139436/GSM139436.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_CHTN-OS-009///geo_accession: GSM139437///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3C///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OS-009.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139437/GSM139437.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_CHTN-OS-010///geo_accession: GSM139438///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3C///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OS-010.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139438/GSM139438.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_CHTN-OS-011///geo_accession: GSM139439///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3B///characteristics_ch1.2: grade: 2///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OS-011.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139439/GSM139439.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_CHTN-OS-018///geo_accession: GSM139440///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3C///characteristics_ch1.2: grade: 2///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OS-018.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139440/GSM139440.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_CHTN-OS-020///geo_accession: GSM139441///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3C///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OS-020.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139441/GSM139441.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_CHTN-OS-029///geo_accession: GSM139442///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3C///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OS-029.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139442/GSM139442.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_CHTN-OS-038///geo_accession: GSM139443///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3C///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OS-038.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139443/GSM139443.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_CHTN-OS-041///geo_accession: GSM139444///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 1C///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OS-041.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139444/GSM139444.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_CHTN-OS-044///geo_accession: GSM139445///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 4///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OS-044.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139445/GSM139445.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_CHTN-OS-046///geo_accession: GSM139446///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 2C///characteristics_ch1.2: grade: 2///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OS-046.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139446/GSM139446.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_CHTN-OS-048///geo_accession: GSM139447///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 4///characteristics_ch1.2: grade: 2///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OS-048.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139447/GSM139447.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_CHTN-OS-053///geo_accession: GSM139448///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3D///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OS-053.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139448/GSM139448.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_CHTN-OS-055///geo_accession: GSM139449///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3C///characteristics_ch1.2: grade: 1///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OS-055.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139449/GSM139449.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_CHTN-OS-068///geo_accession: GSM139450///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3C///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OS-068.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139450/GSM139450.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_CHTN-OS-072///geo_accession: GSM139451///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3C///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OS-072.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139451/GSM139451.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_CHTN-OS-081///geo_accession: GSM139452///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3C///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OS-081.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139452/GSM139452.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_CHTN-OS-089///geo_accession: GSM139453///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3C///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OS-089.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139453/GSM139453.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_CHTN-OS-093///geo_accession: GSM139454///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3C///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OS-093.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139454/GSM139454.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_CHTN-OS-098///geo_accession: GSM139455///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 1A///characteristics_ch1.2: grade: 2///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OS-098.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139455/GSM139455.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_CU-OS-04///geo_accession: GSM139456///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CU-OS-04.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139456/GSM139456.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_CU-OS-05///geo_accession: GSM139457///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 2///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CU-OS-05.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139457/GSM139457.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_KU-OS-001///geo_accession: GSM139458///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 4///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: KU-OS-001.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139458/GSM139458.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_KU-OS-002///geo_accession: GSM139459///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 4///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: KU-OS-002.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139459/GSM139459.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_KU-OS-003///geo_accession: GSM139460///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3c///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: KU-OS-003.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139460/GSM139460.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_KU-OS-005///geo_accession: GSM139461///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3c///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: KU-OS-005.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139461/GSM139461.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_KU-OS-007///geo_accession: GSM139462///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3c///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: KU-OS-007.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139462/GSM139462.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_KU-OS-009///geo_accession: GSM139463///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3c///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: KU-OS-009.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139463/GSM139463.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_KU-OS-011///geo_accession: GSM139464///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 1c///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: KU-OS-011.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139464/GSM139464.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_KU-OS-012///geo_accession: GSM139465///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 2c///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: KU-OS-012.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139465/GSM139465.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_KU-OS-013///geo_accession: GSM139466///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3c///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: KU-OS-013.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139466/GSM139466.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_KU-OS-015///geo_accession: GSM139467///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3c///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: KU-OS-015.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139467/GSM139467.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_KU-OS-018///geo_accession: GSM139468///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 1c///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: KU-OS-018.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139468/GSM139468.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_KU-OS-021///geo_accession: GSM139469///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3c///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: KU-OS-021.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139469/GSM139469.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_KU-OS-022///geo_accession: GSM139470///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3c///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: KU-OS-022.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139470/GSM139470.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_UM-OS-02///geo_accession: GSM139471///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3c///characteristics_ch1.2: grade: 2-3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: UM-OS-02.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139471/GSM139471.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_UM-OS-07///geo_accession: GSM139472///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3c///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: UM-OS-07.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139472/GSM139472.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_UM-OS-09///geo_accession: GSM139473///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3c///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: UM-OS-09.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139473/GSM139473.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_UM-OS-10///geo_accession: GSM139474///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3///characteristics_ch1.2: grade: 1///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: UM-OS-10.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139474/GSM139474.CEL.gz///data_row_count: 22283
1
title: Ovarian_Tumor_Serous_UM-OS-11///geo_accession: GSM139475///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3c///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: UM-OS-11.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139475/GSM139475.CEL.gz///data_row_count: 22283
1
(Other)
4
duplicates:
GSE6008.GSE6008_GSM139476///GSE6008.GSE6008_GSM139477
1
GSE6008.GSE6008_GSM139476///GSE6008.GSE6008_GSM139478
1
GSE6008.GSE6008_GSM139477///GSE6008.GSE6008_GSM139478
1
NA's
100
|
Value
An expression set
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