Files in NanoStringQCPro

Quality metrics and data processing methods for NanoString mRNA gene expression data

R/NanoStringQualityMetrics.R R/utils.R R/NanoStringQCreport.R R/NanoStringQCPro-package.r R/NanoStringConvenience.R R/example_rccSet.R R/previewPNG.R R/0_RccSet-class.R R/BackgroundSubtractionFunctions.R man/negCtrlsPairs.Rd man/ctrlsZprimePlot.Rd man/addCodesetAnnotation.Rd man/checkRccSet.Rd man/presAbsCall.Rd man/fovPlot.Rd man/cutoffByVar.Rd man/makeQCReport.Rd man/RccSet-class.Rd man/readRccBatch.Rd man/lodAssess.Rd man/pdata_fdata_adata.to.rccSet.Rd man/negCtrlsByLane.Rd man/posSumVsAllSumPlot.Rd man/negCtrlsPlot.Rd man/negCtrlsByLane_verticalPlot.Rd man/bdPlot.Rd man/myCols.Rd man/sampleClustering.Rd man/RccSet.Rd man/addQCFlags.Rd man/readCdrDesignData.Rd man/flagSamplesCount.Rd man/allSumPlot.Rd man/example_rccSet.Rd man/scatterPair.Rd man/ctrlsOverviewPlot.Rd man/NanoStringQCPro.Rd man/rccFiles.to.pdata_fdata_adata.Rd man/lodPlot.Rd man/getSpikeInInput.Rd man/contentNorm.Rd man/newRccSet.Rd man/getBlankLabel.Rd man/copyRccSet.Rd man/posNormFactPlot.Rd man/colByFun.Rd man/posCtrlNorm.Rd man/posR2Plot.Rd man/readRcc.Rd man/pcaPlot.Rd man/flagSamplesCtrl.Rd man/densityPlot.Rd man/subtractBackground.Rd man/buildCodesetAnnotation.Rd man/countsInBlankSamples_verticalPlot.Rd man/geneClustering.Rd man/preprocRccSet.Rd man/readRccCollectorToolExport.Rd man/nSolverCsv.to.pdata_fdata_adata.Rd man/iqrPlot.Rd man/previewPNG.Rd man/readRlf.Rd man/assessHousekeeping.Rd man/getBackground.Rd man/posSlopePlot.Rd man/zfacFun.Rd man/dCoVar.Rd man/flagSamplesTech.Rd man/panelCor.Rd man/nSolverBackground.Rd man/posRatioPlot.Rd man/cutoffByMMAD.Rd man/colByCovar.Rd inst/doc/vignetteNanoStringQCPro.pdf inst/templates/QualityControlReportTemplate.Rmd inst/examples/main.R