getTaxonomyMatrix: Get taxonomy matrix

In PhyloProfile: PhyloProfile

Description

Get the (full or subset) taxonomy matrix from "data/taxonomyMatrix.txt" based on an input taxon list

Usage

getTaxonomyMatrix(subsetTaxaCheck = FALSE, taxonIDs = NULL)

Arguments

subsetTaxaCheck	TRUE/FALSE subset taxonomy matrix based on input taxon IDs. Default = FALSE.
taxonIDs	list of input taxon IDs (e.g. ncbi1234). Default = NULL.

Value

Data frame contains the (subset of) taxonomy matrix for list of input taxa.

Author(s)

Vinh Tran [e-mail]

Examples

# get full pre-installed taxonomy matrix
getTaxonomyMatrix(FALSE, NULL)
# get taxonomy matrix for a list of taxon IDs
taxonIDs <- c("ncbi9606", "ncbi10116")
getTaxonomyMatrix(TRUE, taxonIDs)

PhyloProfile documentation built on March 27, 2021, 6:01 p.m.