TCGA_MolecularSubtype: Retrieve molecular subtypes for given TCGA barcodes
In TCGAbiolinks: TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data
Description
Usage
Arguments
Value
Examples
Description
TCGA_MolecularSubtype Retrieve molecular subtypes from TCGA consortium for a given set of barcodes
Usage
1
TCGA_MolecularSubtype(barcodes)
Arguments
barcodes
is a vector of TCGA barcodes
Value
List with $subtypes attribute as a dataframe with barcodes,
samples, subtypes, and colors. The $filtered attribute is returned as filtered samples with no subtype info
Examples
1
TCGA_MolecularSubtype("TCGA-60-2721-01A-01R-0851-07")
TCGAbiolinks documentation built on Nov. 8, 2020, 5:37 p.m.
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Description Usage Arguments Value Examples
Description
TCGA_MolecularSubtype Retrieve molecular subtypes from TCGA consortium for a given set of barcodes
Usage
1 | TCGA_MolecularSubtype(barcodes)
|
Arguments
barcodes |
is a vector of TCGA barcodes |
Value
List with $subtypes attribute as a dataframe with barcodes, samples, subtypes, and colors. The $filtered attribute is returned as filtered samples with no subtype info
Examples
1 | TCGA_MolecularSubtype("TCGA-60-2721-01A-01R-0851-07")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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