TCGAanalyze_analyseGRN: Generate network
In TCGAbiolinks: TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data
Description
Usage
Arguments
Value
Description
TCGAanalyze_analyseGRN perform gene regulatory network.
Usage
1
TCGAanalyze_analyseGRN(TFs, normCounts, kNum)
Arguments
TFs
a vector of genes.
normCounts
is a matrix of gene expression with genes in rows and samples in columns.
kNum
the number of nearest neighbors to consider to estimate the mutual information.
Must be less than the number of columns of normCounts.
Value
an adjacent matrix
TCGAbiolinks documentation built on Nov. 8, 2020, 5:37 p.m.
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Description Usage Arguments Value
Description
TCGAanalyze_analyseGRN perform gene regulatory network.
Usage
1 | TCGAanalyze_analyseGRN(TFs, normCounts, kNum)
|
Arguments
TFs |
a vector of genes. |
normCounts |
is a matrix of gene expression with genes in rows and samples in columns. |
kNum |
the number of nearest neighbors to consider to estimate the mutual information. Must be less than the number of columns of normCounts. |
Value
an adjacent matrix
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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