TCGAanalyze_networkInference: infer gene regulatory networks
In TCGAbiolinks: TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data
Description
Usage
Arguments
Value
Description
TCGAanalyze_networkInference taking expression data as input,
this will return an adjacency matrix of interactions
Usage
1
TCGAanalyze_networkInference(data, optionMethod = "clr")
Arguments
data
expression data, genes in columns, samples in rows
optionMethod
inference method, chose from aracne, c3net, clr and mrnet
Value
an adjacent matrix
TCGAbiolinks documentation built on Nov. 8, 2020, 5:37 p.m.
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Description Usage Arguments Value
Description
TCGAanalyze_networkInference taking expression data as input, this will return an adjacency matrix of interactions
Usage
1 | TCGAanalyze_networkInference(data, optionMethod = "clr")
|
Arguments
data |
expression data, genes in columns, samples in rows |
optionMethod |
inference method, chose from aracne, c3net, clr and mrnet |
Value
an adjacent matrix
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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