UseRaw_afterFilter: Use raw count from the DataPrep object which genes are...

In TCGAbiolinks: TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data

Description

function to keep raw counts after filtering and/or normalizing.

Usage

UseRaw_afterFilter(DataPrep, DataFilt)

Arguments

DataPrep	DataPrep object returned by TCGAanalyze_Preprocessing()
DataFilt	Filtered data frame containing samples in columns and genes in rows after normalization and/or filtering steps

Value

Filtered return object similar to DataPrep with genes removed after normalization and filtering process.

Examples

## Not run: 
  dataPrep_raw <- UseRaw_afterFilter(dataPrep, dataFilt)

## End(Not run)

TCGAbiolinks documentation built on Nov. 8, 2020, 5:37 p.m.