downloadENCODEknockdownMetadata: Download metadata for ENCODE knockdown experiments

In cTRAP: Identification of candidate causal perturbations from differential gene expression data

Description

Download metadata for ENCODE knockdown experiments

Usage

downloadENCODEknockdownMetadata(
  cellLine = NULL,
  gene = NULL,
  file = "ENCODEmetadata.rds"
)

Arguments

cellLine	Character: cell line
gene	Character: target gene
file	Character: RDS file with metadata (if file doesn't exist, it will be created)

Value

Data frame containing ENCODE knockdown experiment metadata

See Also

Other functions related with using ENCODE expression data: loadENCODEsamples(), performDifferentialExpression(), prepareENCODEgeneExpression()

Examples

downloadENCODEknockdownMetadata("HepG2", "EIF4G1")

cTRAP documentation built on Nov. 8, 2020, 10:58 p.m.