launchCMapDataLoader: Load CMap data via a visual interface

In cTRAP: Identification of candidate causal perturbations from differential gene expression data

Description

Load CMap data via a visual interface

Usage

launchCMapDataLoader(
  metadata = "cmapMetadata.txt",
  zscores = "cmapZscores.gctx",
  geneInfo = "cmapGeneInfo.txt",
  compoundInfo = "cmapCompoundInfo.txt",
  cellLine = NULL,
  timepoint = NULL,
  dosage = NULL,
  perturbationType = NULL
)

Arguments

metadata	Data frame (CMap metadata) or character (respective filepath)
zscores	Data frame (GCTX z-scores) or character (respective filepath to load data from file)
geneInfo	Data frame (CMap gene info) or character (respective filepath to load data from file)
compoundInfo	Data frame (CMap compound info) or character (respective filepath to load data from file)
cellLine	Character: cell line (if NULL, all values are loaded)
timepoint	Character: timepoint (if NULL, all values are loaded)
dosage	Character: dosage (if NULL, all values are loaded)
perturbationType	Character: type of perturbation (if NULL, all perturbation types are loaded)

Value

CMap data

See Also

Other visual interface functions: launchDiffExprLoader(), launchMetadataViewer(), launchResultPlotter()

cTRAP documentation built on Nov. 8, 2020, 10:58 p.m.