launchCMapDataLoader: Load CMap data via a visual interface

Description Usage Arguments Value See Also

View source: R/shinyInterface.R

Description

Load CMap data via a visual interface

Usage

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launchCMapDataLoader(
  metadata = "cmapMetadata.txt",
  zscores = "cmapZscores.gctx",
  geneInfo = "cmapGeneInfo.txt",
  compoundInfo = "cmapCompoundInfo.txt",
  cellLine = NULL,
  timepoint = NULL,
  dosage = NULL,
  perturbationType = NULL
)

Arguments

metadata

Data frame (CMap metadata) or character (respective filepath)

zscores

Data frame (GCTX z-scores) or character (respective filepath to load data from file)

geneInfo

Data frame (CMap gene info) or character (respective filepath to load data from file)

compoundInfo

Data frame (CMap compound info) or character (respective filepath to load data from file)

cellLine

Character: cell line (if NULL, all values are loaded)

timepoint

Character: timepoint (if NULL, all values are loaded)

dosage

Character: dosage (if NULL, all values are loaded)

perturbationType

Character: type of perturbation (if NULL, all perturbation types are loaded)

Value

CMap data

See Also

Other visual interface functions: launchDiffExprLoader(), launchMetadataViewer(), launchResultPlotter()


cTRAP documentation built on Nov. 8, 2020, 10:58 p.m.