loadExpressionDrugSensitivityAssociation: Load gene expression and drug sensitivity correlation matrix

In cTRAP: Identification of candidate causal perturbations from differential gene expression data

Description

Load gene expression and drug sensitivity correlation matrix

Usage

loadExpressionDrugSensitivityAssociation(source, file = NULL)

Arguments

source	Character: source of matrix to load; see listExpressionDrugSensitivityAssociation
file	Character: filepath to gene expression and drug sensitivity association dataset (automatically downloaded if file does not exist)

Value

Correlation matrix between gene expression (rows) and drug sensitivity (columns)

See Also

Other functions related with the prediction of targeting drugs: as.table.referenceComparison(), listExpressionDrugSensitivityAssociation(), plot.referenceComparison(), plotTargetingDrugsVSsimilarPerturbations(), predictTargetingDrugs()

Examples

gdsc <- listExpressionDrugSensitivityAssociation()[[1]]
loadExpressionDrugSensitivityAssociation(gdsc)

cTRAP documentation built on Nov. 8, 2020, 10:58 p.m.