loadENCODEsamples: Load ENCODE samples
In cTRAP: Identification of candidate causal perturbations from differential gene expression data
Description
Usage
Arguments
Value
See Also
Examples
Description
Samples are automatically downloaded if they are not found in the current
working directory.
Usage
1
loadENCODEsamples(metadata)
Arguments
metadata
Character: ENCODE metadata
Value
List of loaded ENCODE samples
See Also
Other functions related with using ENCODE expression data:
downloadENCODEknockdownMetadata(),
performDifferentialExpression(),
prepareENCODEgeneExpression()
Examples
1
2
3
4
5
6
7
8
9
if (interactive()) {
# Load ENCODE metadata for a specific cell line and gene
cellLine <- "HepG2"
gene <- c("EIF4G1", "U2AF2")
ENCODEmetadata <- downloadENCODEknockdownMetadata(cellLine, gene)
# Load samples based on filtered ENCODE metadata
loadENCODEsamples(ENCODEmetadata)
}
cTRAP documentation built on Nov. 8, 2020, 10:58 p.m.
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Description Usage Arguments Value See Also Examples
Description
Samples are automatically downloaded if they are not found in the current working directory.
Usage
1 | loadENCODEsamples(metadata)
|
Arguments
metadata |
Character: ENCODE metadata |
Value
List of loaded ENCODE samples
See Also
Other functions related with using ENCODE expression data:
downloadENCODEknockdownMetadata(),
performDifferentialExpression(),
prepareENCODEgeneExpression()
Examples
1 2 3 4 5 6 7 8 9 | if (interactive()) {
# Load ENCODE metadata for a specific cell line and gene
cellLine <- "HepG2"
gene <- c("EIF4G1", "U2AF2")
ENCODEmetadata <- downloadENCODEknockdownMetadata(cellLine, gene)
# Load samples based on filtered ENCODE metadata
loadENCODEsamples(ENCODEmetadata)
}
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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