parse_loc_object: more flexible parsing of single cell objects

In clustifyr: Classifier for Single-cell RNA-seq Using Cell Clusters

Description

more flexible parsing of single cell objects

Usage

parse_loc_object(
  input,
  type = class(input),
  expr_loc = NULL,
  meta_loc = NULL,
  var_loc = NULL,
  cluster_col = NULL,
  lookuptable = NULL
)

Arguments

input	input object
type	look up predefined slots/loc
expr_loc	expression matrix location
meta_loc	metadata location
var_loc	variable genes location
cluster_col	column of clustering from metadata
lookuptable	if not supplied, will look in built-in table for object parsing

Value

list of expression, metadata, vargenes, cluster_col info from object

Examples

obj <- parse_loc_object(s_small3)
length(obj)

clustifyr documentation built on Nov. 8, 2020, 5:32 p.m.