ref_marker_select: marker selection from reference matrix

In clustifyr: Classifier for Single-cell RNA-seq Using Cell Clusters

Description

marker selection from reference matrix

Usage

ref_marker_select(mat, cut = 0.5, arrange = TRUE, compto = 1)

Arguments

mat	reference matrix
cut	an expression minimum cutoff
arrange	whether to arrange (lower means better)
compto	compare max expression to the value of next 1 or more

Value

dataframe, with gene, cluster, ratio columns

Examples

ref_marker_select(
    cbmc_ref,
    cut = 2
)

clustifyr documentation built on Nov. 8, 2020, 5:32 p.m.