estIndepModel: Estimate the independence model belonging to one view

In combi: Compositional omics model based visual integration

Description

Estimate the independence model belonging to one view

Usage

estIndepModel(data, distribution, compositional, maxIt, tol, link, invLink,
  meanVarFit, newtonRaphson, dispFreq, ...)

Arguments

data	a list of data matrices with the same number of samples n in the rows. Also phyloseq objects are acceptable
distribution	a character string describing which distributional assumption should be used.
compositional	A logical indicating if the dataset should be treated as compositional
maxIt	an integer, the maximum number of iterations
tol	A small scalar, the convergence tolerance
link, invLink	link and inverse link function
meanVarFit	mean variance model
newtonRaphson	a boolean, should newton-raphson be used
dispFreq	An integer, frequency of dispersion estimation
...	passed on to the estOff() function

Value

A list with elements

rowOff	The row offsets
colOff	The column offsets
converged	A logical flag, indicating whether the fit converged
iter	An integer, the number of iterations

combi documentation built on Nov. 8, 2020, 5:34 p.m.