print.combi: Print an overview of a fitted combi x

In combi: Compositional omics model based visual integration

Description

Print an overview of a fitted combi x

Usage

## S3 method for class 'combi'
print(x, ...)

Arguments

x	a fitted combi x
...	Further arguments, currently ignored

Value

An overview of the number of dimensions, views and parameters, type of ordination and importance parameters

Examples

data(Zhang)

#Unconstrained
microMetaboInt = combi(
list("microbiome" = zhangMicrobio, "metabolomics" = zhangMetabo),
distributions = c("quasi", "gaussian"), compositional = c(TRUE, FALSE),
logTransformGaussian = FALSE, verbose = TRUE)
#Constrained
microMetaboIntConstr = combi(
    list("microbiome" = zhangMicrobio, "metabolomics" = zhangMetabo),
    distributions = c("quasi", "gaussian"), compositional = c(TRUE, FALSE),
    logTransformGaussian = FALSE, covariates = zhangMetavars, verbose = TRUE)
    #Load the fits
load(system.file("extdata", "zhangFits.RData", package = "combi"))
print(microMetaboInt)
print(microMetaboIntConstr)
#Or simply
microMetaboInt

combi documentation built on Nov. 8, 2020, 5:34 p.m.