extractData: Helper function to extract data matrix from phyloseq,...
In combi: Compositional omics model based visual integration
Description
Usage
Arguments
Value
Examples
Description
Helper function to extract data matrix from phyloseq, expressionset objects etc. Also filers out all zero rows
Usage
1
extractData(data, logTransformGaussian = TRUE)
Arguments
data
The list of data objects, either matrix, phyloseq or ExpressionSet objects
logTransformGaussian
A boolean, should array data be logtransformed
Value
the raw data matrices, samples in the rows
Examples
1
2
3
data(Zhang)
matrixList = extractData(list("microbiome" = zhangMicrobio,
"metabolome" = zhangMetabo))
combi documentation built on Nov. 8, 2020, 5:34 p.m.
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Description Usage Arguments Value Examples
Description
Helper function to extract data matrix from phyloseq, expressionset objects etc. Also filers out all zero rows
Usage
1 | extractData(data, logTransformGaussian = TRUE)
|
Arguments
data |
The list of data objects, either matrix, phyloseq or ExpressionSet objects |
logTransformGaussian |
A boolean, should array data be logtransformed |
Value
the raw data matrices, samples in the rows
Examples
1 2 3 | data(Zhang)
matrixList = extractData(list("microbiome" = zhangMicrobio,
"metabolome" = zhangMetabo))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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