extractCoords: Extract coordinates from fitted object

In combi: Compositional omics model based visual integration

Description

Extract coordinates from fitted object

Usage

extractCoords(modelObj, Dim)

Arguments

modelObj	The fitted model
Dim	the required dimensions

Value

A list with components (matrices with two columns)

latentData	The latent variables
featureData	The feature parameters
varData	The variables

Examples

data(Zhang)

#Unconstrained
microMetaboInt = combi(
list("microbiome" = zhangMicrobio, "metabolomics" = zhangMetabo),
distributions = c("quasi", "gaussian"), compositional = c(TRUE, FALSE),
logTransformGaussian = FALSE, verbose = TRUE)

    #Load the fits
load(system.file("extdata", "zhangFits.RData", package = "combi"))
extractCoords(microMetaboInt, Dim = c(1,2))

combi documentation built on Nov. 8, 2020, 5:34 p.m.