convPlot: Plot the convegrence of the different parameter estimates in...

In combi: Compositional omics model based visual integration

Description

Plot the convegrence of the different parameter estimates in a line plot

Usage

convPlot(model, latent = is.null(View), nVars = Inf, Dim = 1L,
  View = NULL, size = 0.125)

Arguments

model	A fitted modelDI object
latent	A boolean, should latent variable trajectory be plotted
nVars	An integer, the number of variables to plot. By default all are plotted
Dim	An integer, the dimension to be plotted
View	An integer or character string, indicating the view to be plotted (if latent = FALSE)
size	The line size (see ?geom_path)

Value

A ggplot object containing the convergence plot

Examples

data(Zhang)
#Unconstrained
microMetaboInt = combi(
list("microbiome" = zhangMicrobio, "metabolomics" = zhangMetabo),
distributions = c("quasi", "gaussian"), compositional = c(TRUE, FALSE),
logTransformGaussian = FALSE, verbose = TRUE)
load(system.file("extdata", "zhangFits.RData", package = "combi"))
convPlot(microMetaboInt)
convPlot(microMetaboInt, Dim = 2)
convPlot(microMetaboInt, View = "microbiome")

combi documentation built on Nov. 8, 2020, 5:34 p.m.