mod1: Gene modules published in Desmedt et al. 2008

In genefu: Computation of Gene Expression-Based Signatures in Breast Cancer

Description

List of seven gene modules published in Desmedt et a. 2008, i.e. ESR1 (estrogen receptor pathway), ERBB2 (her2/neu receptor pathway), AURKA (proliferation), STAT1 (immune response), PLAU (tumor invasion), VEGF (angogenesis) and CASP3 (apoptosis).

Usage

data(mod1)

Format

mod1 is a list of seven gene signatures, i.e. matrices with 3 columns containing the annotations and information related to the signatures themselves.

Source

http://clincancerres.aacrjournals.org/content/14/16/5158.abstract?ck=nck

References

Desmedt C, Haibe-Kains B, Wirapati P, Buyse M, Larsimont D, Bontempi G, Delorenzi M, Piccart M, and Sotiriou C (2008) "Biological processes associated with breast cancer clinical outcome depend on the molecular subtypes", Clinical Cancer Research, 14(16):5158–5165.

Examples

data(mod1)

genefu documentation built on Jan. 28, 2021, 2:01 a.m.