API for genefu
Computation of Gene Expression-Based Signatures in Breast Cancer
| Global functions | |
|---|---|
| `.ovcSigs` | Source code |
| `bimod` | Source code |
| `boxplotplus2` | Source code |
| `compareProtoCor` | Source code |
| `compute.pairw.cor.meta` | Source code |
| `compute.pairw.cor.z` | Source code |
| `compute.proto.cor.meta` | Source code |
| `cordiff.dep` | Source code |
| `endoPredict` | Source code |
| `fuzzy.ttest` | Source code |
| `gene70` | Source code |
| `gene76` | Source code |
| `geneid.map` | Source code |
| `genius` | Source code |
| `ggi` | Source code |
| `ihc4` | Source code |
| `intrinsic.cluster.predict` | Source code |
| `intrinsic.cluster` | Source code |
| `map.datasets` | Source code |
| `npi` | Source code |
| `oncotypedx` | Source code |
| `ovcAngiogenic` | Source code |
| `ovcCrijns` | Source code |
| `ovcTCGA` | Source code |
| `ovcYoshihara` | Source code |
| `pik3cags` | Source code |
| `ps.cluster` | Source code |
| `read.m.file` | Source code |
| `rescale` | Source code |
| `rorS` | Source code |
| `sig.score` | Source code |
| `st.gallen` | Source code |
| `stab.fs.ranking` | Source code |
| `stab.fs` | Source code |
| `subtype.cluster.predict` | Source code |
| `subtype.cluster` | Source code |
| `tamr13` | Source code |
| `tbrm` | Source code |
| `weighted.meanvar` | Source code |
| `write.m.file` | Source code |
| annot.expos | Man page |
| annot.nkis | Man page |
| annot.vdxs | Man page |
| bimod | Man page |
| boxplotplus2 | Man page |
| claudinLow | Man page Source code |
| claudinLowData | Man page |
| collapseIDs | Man page Source code |
| compareProtoCor | Man page |
| compute.pairw.cor.meta | Man page |
| compute.pairw.cor.z | Man page |
| compute.proto.cor.meta | Man page |
| cordiff.dep | Man page |
| data.expos | Man page |
| data.nkis | Man page |
| data.vdxs | Man page |
| demo.expos | Man page |
| demo.nkis | Man page |
| demo.vdxs | Man page |
| endoPredict | Man page |
| expos | Man page |
| fuzzy.ttest | Man page |
| gene70 | Man page |
| gene76 | Man page |
| genefu | Man page |
| genefu-package | Man page |
| geneid.map | Man page |
| genius | Man page |
| ggi | Man page |
| ihc4 | Man page |
| intrinsic.cluster | Man page |
| intrinsic.cluster.predict | Man page |
| map.datasets | Man page |
| medianCtr | Man page Source code |
| mod1 | Man page |
| mod2 | Man page |
| modelOvcAngiogenic | Man page |
| molecular.subtyping | Man page |
| nkis | Man page |
| npi | Man page |
| oncotypedx | Man page |
| ovcAngiogenic | Man page |
| ovcCrijns | Man page |
| ovcTCGA | Man page |
| ovcYoshihara | Man page |
| overlapSets | Man page Source code |
| pam50 | Man page |
| pam50.robust | Man page |
| pam50.scale | Man page |
| pik3cags | Man page |
| power.cor | Man page |
| ps.cluster | Man page |
| read.m.file | Man page |
| readArray | Man page Source code |
| rename.duplicate | Man page |
| rescale | Man page |
| rorS | Man page |
| scmgene.robust | Man page |
| scmod1.robust | Man page |
| scmod2.robust | Man page |
| setcolclass.df | Man page |
| sig.endoPredict | Man page |
| sig.gene70 | Man page |
| sig.gene76 | Man page |
| sig.genius | Man page |
| sig.ggi | Man page |
| sig.oncotypedx | Man page |
| sig.pik3cags | Man page |
| sig.score | Man page |
| sig.tamr13 | Man page |
| sigOvcAngiogenic | Man page |
| sigOvcCrijns | Man page |
| sigOvcSpentzos | Man page |
| sigOvcTCGA | Man page |
| sigOvcYoshihara | Man page |
| spearmanCI | Man page |
| ssp2003 | Man page |
| ssp2003.robust | Man page |
| ssp2003.scale | Man page |
| ssp2006 | Man page |
| ssp2006.robust | Man page |
| ssp2006.scale | Man page |
| st.gallen | Man page |
| stab.fs | Man page |
| stab.fs.ranking | Man page |
| strescR | Man page |
| subtype.cluster | Man page |
| subtype.cluster.predict | Man page |
| tamr13 | Man page |
| tbrm | Man page |
| vdxs | Man page |
| weighted.meanvar | Man page |
| write.m.file | Man page |
