Files in genefu
Computation of Gene Expression-Based Signatures in Breast Cancer

README
DESCRIPTION
NAMESPACE
inst/doc/genefu.Rnw
inst/doc/genefu.pdf inst/doc/genefu.R
inst/extdata/scmod1_robust_model.csv
inst/extdata/veer2002_sig_gene70.csv
inst/extdata/bentink2012_angiogenic.csv
inst/extdata/scmgene_robust_model.csv
inst/extdata/ssp2003_model.csv
inst/extdata/ssp2006_model.csv
inst/extdata/yoshihara2010_sig.csv
inst/extdata/loi2010_pik3cags.csv
inst/extdata/filipits2011_sig_endopredict.csv
inst/extdata/T.E.9CELL-LINE.txt
inst/extdata/wirapati2008_genemodules.csv
inst/extdata/desmedt2008_genemodules.csv
inst/extdata/pam50_model.csv
inst/extdata/crijns2009_sig.csv
inst/extdata/spentzos2011_sig.csv
inst/extdata/paik2004_sig_oncotypedx.csv
inst/extdata/haibekains2009_sig_genius.csv
inst/extdata/wang2005_sig_gene76.csv
inst/extdata/tcga2011_sig.csv
inst/extdata/sotiriou2006_sig_ggi.csv
inst/extdata/scmod2_robust_model.csv
inst/extdata/loi2008_tamr13.csv
vignettes/genefu.Rnw
R/overlapSets.R R/SpearmanCI.R R/geneid.map.R R/rescale.R R/ovcCrijns.R R/rename.duplicate.R R/bimod.R R/power.cor.R R/oncotypedx.R R/intrinsic.cluster.predict.R R/gene70.R R/molecular.subtyping.R R/ovcAngiogenic.R R/pik3cags.R R/sig.score.R R/compare.proto.cor.R R/compute.pairw.cor.meta.R R/boxplotplus2.R R/fuzzy.ttest.R R/tbrm.R R/rorS.R R/ihc4.R R/ovcTCGA.R R/compute.pairw.cor.z.R R/gene76.R R/readArray.R R/strescR.R R/subtype.cluster.predict.R R/stab.fs.R R/ovcSigs.R R/subtype.cluster.R R/claudinLow.R R/intrinsic.cluster.R R/map.datasets.R R/write.m.file.R R/read.m.file.R R/weighted.meanvar.R R/setcolclass.df.R R/npi.R R/stab.fs.ranking.R R/endoPredict.R R/compute.proto.cor.meta.R R/ggi.R R/genius.R R/cordiff.dep.R R/ps.cluster.R R/medianCtr.R R/ovcYoshihara.R R/tamr13.R R/collapseIDs.R R/st.gallen.R man/compute.pairw.cor.z.Rd man/fuzzy.ttest.Rd man/ps.cluster.Rd man/nkis.Rd man/ovcAngiogenic.Rd man/spearmanCI.Rd man/sig.ggi.Rd man/readArray.Rd man/strescR.Rd man/genius.Rd man/oncotypedx.Rd man/genefu-package.Rd man/compute.pairw.cor.meta.Rd man/rorS.Rd man/sigOvcSpentzos.Rd man/tbrm.Rd man/intrinsic.cluster.Rd man/ihc4.Rd man/sigOvcAngiogenic.Rd man/sig.genius.Rd man/read.m.file.Rd man/sig.gene76.Rd man/ovcCrijns.Rd man/setcolclass.df.Rd man/vdxs.Rd man/gene76.Rd man/rename.duplicate.Rd man/pam50.Rd man/ovcTCGA.Rd man/sigOvcYoshihara.Rd man/mod2.Rd man/write.m.file.Rd man/cordiff.dep.Rd man/stab.fs.ranking.Rd man/molecular.subtyping.Rd man/sig.score.Rd man/sig.gene70.Rd man/compare.proto.cor.Rd man/sig.oncotypedx.Rd man/sigOvcCrijns.Rd man/scmod2.robust.Rd man/expos.Rd man/scmod1.robust.Rd man/scmgene.robust.Rd man/subtype.cluster.Rd man/bimod.Rd man/ssp2003.Rd man/rescale.Rd man/sigOvcTCGA.Rd man/ggi.Rd man/npi.Rd man/overlapSets.Rd man/power.cor.Rd man/st.gallen.Rd man/sig.pik3cags.Rd man/mod1.Rd man/ssp2006.Rd man/pik3cags.Rd man/claudinLow.Rd man/stab.fs.Rd man/modelOvcAngiogenic.Rd man/sig.tamr13.Rd man/claudinLowData.Rd man/gene70.Rd man/collapseIDs.Rd man/subtype.cluster.predict.Rd man/geneid.map.Rd man/sig.endoPredict.Rd man/tamr13.Rd man/intrinsic.cluster.predict.Rd man/weighted.meanvar.Rd man/boxplotplus2.Rd man/map.datasets.Rd man/compute.proto.cor.meta.Rd man/endoPredict.Rd man/ovcYoshihara.Rd man/medianCtr.Rd
build/vignette.rds
build/genefu.pdf
data/nkis.rda
data/pam50.robust.rda
data/ssp2003.robust.rda
data/mod1.rda
data/sigOvcCrijns.rda
data/sig.genius.rda
data/pam50.rda
data/mod2.rda
data/sig.ggi.rda
data/ssp2003.rda
data/expos.rda
data/ssp2003.scale.rda
data/ssp2006.scale.rda
data/sig.pik3cags.rda
data/claudinLowData.rda
data/ssp2006.robust.rda
data/ssp2006.rda
data/scmgene.robust.rda
data/sig.endoPredict.rda
data/sigOvcYoshihara.rda
data/sig.gene70.rda
data/vdxs.rda
data/sig.gene76.rda
data/sigOvcTCGA.rda
data/sigOvcAngiogenic.rda
data/datalist
data/scmod1.robust.rda
data/sig.oncotypedx.rda
data/pam50.scale.rda
data/scmod2.robust.rda
data/sig.tamr13.rda
data/sigOvcSpentzos.rda
data/modelOvcAngiogenic.rda
genefu documentation built on May 2, 2018, 2:10 a.m.