signatureEnrichment: Performs sample stratification based on signature...

Description Usage Arguments Value See Also

View source: R/signatureCorrelation.R

Description

Performs k-means clustering to assign signature to samples and performs enrichment analysis. Note - Do not use this function. This will be removed in future updates.

Usage

1
signatureEnrichment(maf, sig_res, minMut = 5, useCNV = FALSE, fn = NULL)

Arguments

maf

an MAF object used for signature analysis.

sig_res

Signature results from extractSignatures

minMut

Consider only genes with minimum this number of samples mutated. Default 5.

useCNV

whether to include copy number events. Only applicable when MAF is read along with copy number data. Default TRUE if available.

fn

basename for output file. Default NULL.

Value

result list containing p-values

See Also

plotEnrichmentResults


maftools documentation built on Feb. 6, 2021, 2 a.m.