write.GisticSummary: Writes GISTIC summaries to output tab-delimited text files.

In maftools: Summarize, Analyze and Visualize MAF Files

Description

Writes GISTIC summaries to output tab-delimited text files.

Usage

write.GisticSummary(gistic, basename = NULL)

Arguments

gistic	an object of class GISTIC generated by readGistic
basename	basename for output file to be written.

Value

None. Writes output as tab delimited text files.

See Also

readGistic

Examples

all.lesions <- system.file("extdata", "all_lesions.conf_99.txt", package = "maftools")
amp.genes <- system.file("extdata", "amp_genes.conf_99.txt", package = "maftools")
del.genes <- system.file("extdata", "del_genes.conf_99.txt", package = "maftools")
scores.gistic <- system.file("extdata", "scores.gistic", package = "maftools")
laml.gistic = readGistic(gisticAllLesionsFile = all.lesions, gisticAmpGenesFile = amp.genes, gisticDelGenesFile = del.genes, gisticScoresFile = scores.gistic)
write.GisticSummary(gistic = laml.gistic, basename = 'laml')

maftools documentation built on Feb. 6, 2021, 2 a.m.