write.GisticSummary: Writes GISTIC summaries to output tab-delimited text files.

Description Usage Arguments Value See Also Examples

View source: R/writeGisticSummary.R

Description

Writes GISTIC summaries to output tab-delimited text files.

Usage

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Arguments

gistic

an object of class GISTIC generated by readGistic

basename

basename for output file to be written.

Value

None. Writes output as tab delimited text files.

See Also

readGistic

Examples

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all.lesions <- system.file("extdata", "all_lesions.conf_99.txt", package = "maftools")
amp.genes <- system.file("extdata", "amp_genes.conf_99.txt", package = "maftools")
del.genes <- system.file("extdata", "del_genes.conf_99.txt", package = "maftools")
scores.gistic <- system.file("extdata", "scores.gistic", package = "maftools")
laml.gistic = readGistic(gisticAllLesionsFile = all.lesions, gisticAmpGenesFile = amp.genes, gisticDelGenesFile = del.genes, gisticScoresFile = scores.gistic)
write.GisticSummary(gistic = laml.gistic, basename = 'laml')

maftools documentation built on Feb. 6, 2021, 2 a.m.