| Borda | Ensemble method for miRNA target prediction using Borda count... |
| BordaTopk | Ensemble method for miRNA target prediction using Borda count... |
| bRank | Extract topk predicted targets of a miRNA Rank all the... |
| convert | Convert miRNA symbols from a miRBase version to another |
| Dcov | miRNA target prediction with the Distance correlation method |
| DiffExpAnalysis | Differentially expressed analysis |
| Elastic | miRNA target prediction with the Elastic-net regression... |
| experiment | Function for validate the results from all 12 methods. |
| Extopk | Extract top k miRNA-mRNA interactions |
| filterAndCompare | Filter and compare the validation results from 12 methods... |
| getData | getData from GDC |
| GOBPenrichment | Functional enrichment analysis |
| Hoeffding | miRNA target prediction with the Hoeffding correlation... |
| ICPPam50 | Identify miRNA targets by ICP and PAM50 |
| IDA | miRNA target prediction with the IDA method |
| identifymiRTargetsByEnsemble | Identify the top miRNA targets by an ensemble method with... |
| identifymiRTargetsByICPPam50 | Identify the top miRNA targets by ICP and PAM50 |
| ImputeNormData | Filter, impute, and normalise data. |
| KEGGenrichment | Functional enrichment analysis KEGG enrichment analysis for a... |
| Kendall | miRNA target prediction with the Kendall correlation... |
| Lasso | miRNA target prediction with the Lasso method |
| MI | miRNA target prediction with mutual information method |
| miRLAB-package | A dry lab for exploring miRNA-mRNA relationships |
| Pearson | miRNA target prediction with the Pearson correlation... |
| ProMISe | miRNA target prediction with the ProMISe method |
| RDC | miRNA target prediction with the Randomized Dependence... |
| Read | Read dataset from csv file |
| ReadExtResult | Read results from other methods |
| readHeader | Read the header of the dataset |
| Spearman | miRNA target prediction with the Spearman correlation... |
| Standardise | Stardarsise the dataset Stadardise the dataset to have mean=0... |
| ValidateAll | Validate the targets of all miRNA using both experimentally... |
| Validation | Validate the targets of a miRNA |
| ValidationT | Validate the targets of a miRNA using transfection data |
| Zscore | miRNA target prediction with the Z-score method |
