ICPPam50: Identify miRNA targets by ICP and PAM50
In miRLAB: Dry lab for exploring miRNA-mRNA relationships
Description
Usage
Arguments
Value
References
Description
This function identifies miRNA targets by ICP and PAM50.
Usage
1
ICPPam50(d, nmiR, nmR, fiftymRNAsData)
Arguments
d
A matrix of expression of miRNAs and mRNAs with columns being miRNA or mRNA names and rows being samples
nmiR
Number of miRNAs
nmR
Number of mRNAs
fiftymRNAsData
A matrix of expression of 50 mRNAs in PAM50 with columns being mRNA names and rows being samples
Value
The matrix of causal effects of miRNAs and mRNAs with columns being miRNAs and rows being mRNAs
References
1. Parker, J. S., et al. (2009). "Supervised Risk Predictor of Breast Cancer Based on Intrinsic Subtypes." Journal of Clinical Oncology 27(8): 1160-1167.
miRLAB documentation built on Nov. 8, 2020, 5:45 p.m.
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Description Usage Arguments Value References
Description
This function identifies miRNA targets by ICP and PAM50.
Usage
1 | ICPPam50(d, nmiR, nmR, fiftymRNAsData)
|
Arguments
d |
A matrix of expression of miRNAs and mRNAs with columns being miRNA or mRNA names and rows being samples |
nmiR |
Number of miRNAs |
nmR |
Number of mRNAs |
fiftymRNAsData |
A matrix of expression of 50 mRNAs in PAM50 with columns being mRNA names and rows being samples |
Value
The matrix of causal effects of miRNAs and mRNAs with columns being miRNAs and rows being mRNAs
References
1. Parker, J. S., et al. (2009). "Supervised Risk Predictor of Breast Cancer Based on Intrinsic Subtypes." Journal of Clinical Oncology 27(8): 1160-1167.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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