Spearman: miRNA target prediction with the Spearman correlation...
In miRLAB: Dry lab for exploring miRNA-mRNA relationships
Description
Usage
Arguments
Value
References
Examples
Description
Calculate the Spearman correlation coefficient of each pair of miRNA-mRNA,and return a matrix of correlation coefficients with columns are miRNAs and rows are mRNAs.
Usage
1
Arguments
datacsv
the input dataset in csv format
cause
the column range that specifies the causes (miRNAs), e.g. 1:35
effect
the column range that specifies the effects (mRNAs), e.g. 36:2000
targetbinding
the putative target, e.g. "TargetScan.csv". If targetbinding is not specified, only expression data is used.
If targetbinding is specified, the prediction results using expression data with be intersected with the interactions in the target binding file.
Value
A matrix that includes the Spearman correlation coefficients. Columns are miRNAs, rows are mRNAs.
References
Spearman, C. (1904) General intelligence, objectively determined and measured. Am. J. Psychol., 15, 201 - 92.
Examples
1
2
dataset=system.file("extdata", "ToyEMT.csv", package="miRLAB")
results=Spearman(dataset, 1:3, 4:18)
miRLAB documentation built on Nov. 8, 2020, 5:45 p.m.
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Description Usage Arguments Value References Examples
Description
Calculate the Spearman correlation coefficient of each pair of miRNA-mRNA,and return a matrix of correlation coefficients with columns are miRNAs and rows are mRNAs.
Usage
1 |
Arguments
datacsv |
the input dataset in csv format |
cause |
the column range that specifies the causes (miRNAs), e.g. 1:35 |
effect |
the column range that specifies the effects (mRNAs), e.g. 36:2000 |
targetbinding |
the putative target, e.g. "TargetScan.csv". If targetbinding is not specified, only expression data is used. If targetbinding is specified, the prediction results using expression data with be intersected with the interactions in the target binding file. |
Value
A matrix that includes the Spearman correlation coefficients. Columns are miRNAs, rows are mRNAs.
References
Spearman, C. (1904) General intelligence, objectively determined and measured. Am. J. Psychol., 15, 201 - 92.
Examples
1 2 | dataset=system.file("extdata", "ToyEMT.csv", package="miRLAB")
results=Spearman(dataset, 1:3, 4:18)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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