identifymiRTargetsByEnsemble: Identify the top miRNA targets by an ensemble method with...
In miRLAB: Dry lab for exploring miRNA-mRNA relationships
Description
Usage
Arguments
Value
References
Description
This function identifies the top miRNA targets by an ensemble method with ICP-PAM50, Pearson and Lasso.
Usage
1
2
identifymiRTargetsByEnsemble(d, nmiR, nmR, fiftymRNAsData, top = 1,
topk = 500)
Arguments
d
A matrix of expression of miRNAs and mRNAs with columns being miRNA or mRNA names and rows being samples
nmiR
Number of miRNAs
nmR
Number of mRNAs
fiftymRNAsData
A matrix of expression of 50 mRNAs in PAM50 with columns being mRNA names and rows being samples
top
1 if getting the top of all miRNAs and 2 if getting the top of each miRNA
topk
Number of the top to get
Value
The top k miRNA targets
References
1. Parker, J. S., et al. (2009). "Supervised Risk Predictor of Breast Cancer Based on Intrinsic Subtypes." Journal of Clinical Oncology 27(8): 1160-1167.
miRLAB documentation built on Nov. 8, 2020, 5:45 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value References
Description
This function identifies the top miRNA targets by an ensemble method with ICP-PAM50, Pearson and Lasso.
Usage
1 2 | identifymiRTargetsByEnsemble(d, nmiR, nmR, fiftymRNAsData, top = 1,
topk = 500)
|
Arguments
d |
A matrix of expression of miRNAs and mRNAs with columns being miRNA or mRNA names and rows being samples |
nmiR |
Number of miRNAs |
nmR |
Number of mRNAs |
fiftymRNAsData |
A matrix of expression of 50 mRNAs in PAM50 with columns being mRNA names and rows being samples |
top |
1 if getting the top of all miRNAs and 2 if getting the top of each miRNA |
topk |
Number of the top to get |
Value
The top k miRNA targets
References
1. Parker, J. S., et al. (2009). "Supervised Risk Predictor of Breast Cancer Based on Intrinsic Subtypes." Journal of Clinical Oncology 27(8): 1160-1167.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.