Extopk: Extract top k miRNA-mRNA interactions
In miRLAB: Dry lab for exploring miRNA-mRNA relationships
Description
Usage
Arguments
Value
Examples
Description
Rank the miRNA-mRNA interactions based on absolute values of the correlations/scores/causal effects, and return
the topk interactions.
Usage
1
Extopk(cormat, topk)
Arguments
cormat
the correlation matrix that need to be extracted with columns are miRNAs and rows are mRNAs
topk
the number of interactions that need to be extracted.
Value
topk interactions
Examples
1
2
3
dataset=system.file("extdata", "ToyEMT.csv", package="miRLAB")
EMTresults=Pearson(dataset, 1:3, 4:18)
top10=Extopk(EMTresults, 10)
miRLAB documentation built on Nov. 8, 2020, 5:45 p.m.
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Description Usage Arguments Value Examples
Description
Rank the miRNA-mRNA interactions based on absolute values of the correlations/scores/causal effects, and return the topk interactions.
Usage
1 | Extopk(cormat, topk)
|
Arguments
cormat |
the correlation matrix that need to be extracted with columns are miRNAs and rows are mRNAs |
topk |
the number of interactions that need to be extracted. |
Value
topk interactions
Examples
1 2 3 | dataset=system.file("extdata", "ToyEMT.csv", package="miRLAB")
EMTresults=Pearson(dataset, 1:3, 4:18)
top10=Extopk(EMTresults, 10)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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