bRank: Extract topk predicted targets of a miRNA Rank all the...
In miRLAB: Dry lab for exploring miRNA-mRNA relationships
Description
Usage
Arguments
Value
Examples
Description
Extract topk predicted targets of a miRNA
Rank all the targets of a miRNA and extract the topk targets
Usage
1
Arguments
CEmatrix
the matrix of correlation/causal effect/score results with columns are miRNAs and rows are mRNAs
causeIndex
the column index of the miRNA that we would like to extract
topk
the number of targets being extracted
downreg
if TRUE the negative correlation/causal effect/score will be on the top of the ranking. This is to
favour the negative regulations.
Value
a matrix with 3 columns, where the first column contains the miRNA, the second column contains the mRNAs and the last column contains the correlations/causal effects/scores
Examples
1
2
3
dataset=system.file("extdata", "ToyEMT.csv", package="miRLAB")
ps=Pearson(dataset, cause=1:3, effect=4:18)
miR200aTop10 = bRank(ps, 3, 10, TRUE)
miRLAB documentation built on Nov. 8, 2020, 5:45 p.m.
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Description Usage Arguments Value Examples
Description
Extract topk predicted targets of a miRNA Rank all the targets of a miRNA and extract the topk targets
Usage
1 |
Arguments
CEmatrix |
the matrix of correlation/causal effect/score results with columns are miRNAs and rows are mRNAs |
causeIndex |
the column index of the miRNA that we would like to extract |
topk |
the number of targets being extracted |
downreg |
if TRUE the negative correlation/causal effect/score will be on the top of the ranking. This is to favour the negative regulations. |
Value
a matrix with 3 columns, where the first column contains the miRNA, the second column contains the mRNAs and the last column contains the correlations/causal effects/scores
Examples
1 2 3 | dataset=system.file("extdata", "ToyEMT.csv", package="miRLAB")
ps=Pearson(dataset, cause=1:3, effect=4:18)
miR200aTop10 = bRank(ps, 3, 10, TRUE)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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