experiment: Function for validate the results from all 12 methods.

Description Usage Arguments Value

View source: R/miRLAB.R

Description

Function for validate the results from all 12 methods.

Usage

1
experiment(allmethods, topk, Expgroundtruth, LFC, downreg)

Arguments

allmethods

A list of results (matrix with columns are miRNA and rows are mRNAs).

topk

Top k targets of each miRNA that will be extracted for validation

Expgroundtruth

The ground truth in .csv file for validation

LFC

log fold-change for validating the results using transfection experiments

downreg

If set to TRUE the negative effects will have higher ranks than the positives.

Value

The validation results for all 12 methods


miRLAB documentation built on Nov. 8, 2020, 5:45 p.m.