experiment: Function for validate the results from all 12 methods.
In miRLAB: Dry lab for exploring miRNA-mRNA relationships
Description
Usage
Arguments
Value
Description
Function for validate the results from all 12 methods.
Usage
1
experiment(allmethods, topk, Expgroundtruth, LFC, downreg)
Arguments
allmethods
A list of results (matrix with columns are miRNA and rows are mRNAs).
topk
Top k targets of each miRNA that will be extracted for validation
Expgroundtruth
The ground truth in .csv file for validation
LFC
log fold-change for validating the results using transfection experiments
downreg
If set to TRUE the negative effects will have higher ranks than the positives.
Value
The validation results for all 12 methods
miRLAB documentation built on Nov. 8, 2020, 5:45 p.m.
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Description Usage Arguments Value
Description
Function for validate the results from all 12 methods.
Usage
1 | experiment(allmethods, topk, Expgroundtruth, LFC, downreg)
|
Arguments
allmethods |
A list of results (matrix with columns are miRNA and rows are mRNAs). |
topk |
Top k targets of each miRNA that will be extracted for validation |
Expgroundtruth |
The ground truth in .csv file for validation |
LFC |
log fold-change for validating the results using transfection experiments |
downreg |
If set to TRUE the negative effects will have higher ranks than the positives. |
Value
The validation results for all 12 methods
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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