identifymiRTargetsByICPPam50: Identify the top miRNA targets by ICP and PAM50
In miRLAB: Dry lab for exploring miRNA-mRNA relationships
Description
Usage
Arguments
Value
References
Description
This function identifies the top miRNA targets by ICP and PAM50.
Usage
1
2
identifymiRTargetsByICPPam50(d, nmiR, nmR, fiftymRNAsData, top = 1,
topk = 500)
Arguments
d
A matrix of expression of miRNAs and mRNAs with columns being miRNA or mRNA names and rows being samples
nmiR
Number of miRNAs
nmR
Number of mRNAs
fiftymRNAsData
A matrix of expression of 50 mRNAs in PAM50 with columns being mRNA names and rows being samples
top
1 if getting the top of all miRNAs and 2 if getting the top of each miRNA
topk
Number of the top to get
Value
The top k miRNA targets
References
1. Parker, J. S., et al. (2009). "Supervised Risk Predictor of Breast Cancer Based on Intrinsic Subtypes." Journal of Clinical Oncology 27(8): 1160-1167.
miRLAB documentation built on Nov. 8, 2020, 5:45 p.m.
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Description Usage Arguments Value References
Description
This function identifies the top miRNA targets by ICP and PAM50.
Usage
1 2 | identifymiRTargetsByICPPam50(d, nmiR, nmR, fiftymRNAsData, top = 1,
topk = 500)
|
Arguments
d |
A matrix of expression of miRNAs and mRNAs with columns being miRNA or mRNA names and rows being samples |
nmiR |
Number of miRNAs |
nmR |
Number of mRNAs |
fiftymRNAsData |
A matrix of expression of 50 mRNAs in PAM50 with columns being mRNA names and rows being samples |
top |
1 if getting the top of all miRNAs and 2 if getting the top of each miRNA |
topk |
Number of the top to get |
Value
The top k miRNA targets
References
1. Parker, J. S., et al. (2009). "Supervised Risk Predictor of Breast Cancer Based on Intrinsic Subtypes." Journal of Clinical Oncology 27(8): 1160-1167.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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