ML.edesign: The function creates an data frame containing the parameters...
In oneChannelGUI: A graphical interface designed to facilitate analysis of microarrays and miRNA/RNA-seq data on laptops
Description
This function uses a specific configuration of Target column of the affylmGUI target file.
To know more about target file see affylmGUI help.
Each row of the column named Target, in the affylmGUI target file, describes the array on the basis
of the experimental design.
Each element needed for the construction of the data frame is separated from the others by an underscore.
All the other elements refer to experimental conditions or clinical parameters.
The absence of a parameter NEEDS to be described in the Target file by NA
Considering two different conditions to be evaluated each row is made of 5 elements:
Time_Replicate_Control_cond1_cond2 all separated by an underscore.
Having an experiment made of 9 arrays with 4 different experimental parameters
the affylmGUI target file will look like:
Name FileName Target
mC1 M1.CEL 0_1_pos_0_NA
mC2 M4.CEL 0_1_pos_0_yes
mC3 M7.CEL 0_1_neg_0_no
mE1 M3.CEL 24_2_neg_1_NA
mE2 M6.CEL 24_2_NA_1_yes
mE3 M9.CEL 24_2_neg_1_yes
mI1 M2.CEL 12_3_0_pos_yes
mI2 M5.CEL 12_3_0_pos_no
mI3 M8.CEL 12_3_0_pos_no
Usage
1
Author(s)
Raffaele A Calogero
oneChannelGUI documentation built on Nov. 17, 2017, 11:02 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description
This function uses a specific configuration of Target column of the affylmGUI target file.
To know more about target file see affylmGUI help.
Each row of the column named Target, in the affylmGUI target file, describes the array on the basis
of the experimental design.
Each element needed for the construction of the data frame is separated from the others by an underscore.
All the other elements refer to experimental conditions or clinical parameters.
The absence of a parameter NEEDS to be described in the Target file by NA
Considering two different conditions to be evaluated each row is made of 5 elements:
Time_Replicate_Control_cond1_cond2 all separated by an underscore.
Having an experiment made of 9 arrays with 4 different experimental parameters
the affylmGUI target file will look like:
| Name | FileName | Target |
| mC1 | M1.CEL | 0_1_pos_0_NA |
| mC2 | M4.CEL | 0_1_pos_0_yes |
| mC3 | M7.CEL | 0_1_neg_0_no |
| mE1 | M3.CEL | 24_2_neg_1_NA |
| mE2 | M6.CEL | 24_2_NA_1_yes |
| mE3 | M9.CEL | 24_2_neg_1_yes |
| mI1 | M2.CEL | 12_3_0_pos_yes |
| mI2 | M5.CEL | 12_3_0_pos_no |
| mI3 | M8.CEL | 12_3_0_pos_no
|
Usage
1 |
Author(s)
Raffaele A Calogero
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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