mapping2RefSeq: This function maps on NCBI Reference sequences spliced exons...
In oneChannelGUI: A graphical interface designed to facilitate analysis of microarrays and miRNA/RNA-seq data on laptops
Description
This function retrieve from RRE the PSR sequences associated to the exon-level probe sets
using blastn detects the best refseq associated to any of the exon-level probe sets
retrieve from org.XX.eg.db the EG associated to any of the detected refseq and retrieves
all the refseqs associated to the EG. Subsequently check if PSR maps on all the refseqs associated to the eg (conserved exon)
or only some of them (isoform specific exon)
Usage
1
Author(s)
Raffaele A Calogero
oneChannelGUI documentation built on Nov. 17, 2017, 11:02 a.m.
R Package Documentation
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Description
This function retrieve from RRE the PSR sequences associated to the exon-level probe sets using blastn detects the best refseq associated to any of the exon-level probe sets retrieve from org.XX.eg.db the EG associated to any of the detected refseq and retrieves all the refseqs associated to the EG. Subsequently check if PSR maps on all the refseqs associated to the eg (conserved exon) or only some of them (isoform specific exon)
Usage
1 |
Author(s)
Raffaele A Calogero
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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