mapping2exon: This function maps on exon-level Probe Selection Region (PSR)...
In oneChannelGUI: A graphical interface designed to facilitate analysis of microarrays and miRNA/RNA-seq data on laptops
Description
This function retrieve from RRE the PSR sequences associated to the exon-level probe sets
and all exons associated to the gene associated to PRS. Subsequently identify the exon where PSR maps and procuces a
fasta file were are located exon-level PSR and target exon.
The mapping is done using the countPattern function of the Biostrings package. Up to three mismathces are allowed in PSR
mapping on exonic sequence.
Usage
1
Author(s)
Raffaele A Calogero
oneChannelGUI documentation built on Nov. 17, 2017, 11:02 a.m.
R Package Documentation
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Description
This function retrieve from RRE the PSR sequences associated to the exon-level probe sets and all exons associated to the gene associated to PRS. Subsequently identify the exon where PSR maps and procuces a fasta file were are located exon-level PSR and target exon. The mapping is done using the countPattern function of the Biostrings package. Up to three mismathces are allowed in PSR mapping on exonic sequence.
Usage
1 |
Author(s)
Raffaele A Calogero
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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