qcMDS: This function plots the sample relations based on...
In oneChannelGUI: A graphical interface designed to facilitate analysis of microarrays and miRNA/RNA-seq data on laptops
Description
This function is a variation on the usual multdimensional scaling
(or principle coordinate) plot, in that a distance measure
particularly appropriate for the digital gene expression (DGE)
context is used. The distance between each pair of samples
(columns) is the square root of the common dispersion for the top
genes which best distinguish that pair of samples. These
top genes are selected according to the tagwise
dispersion of all the samples.
Usage
1
qcMDS()
Author(s)
Raffaele A Calogero
oneChannelGUI documentation built on Nov. 17, 2017, 11:02 a.m.
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description
This function is a variation on the usual multdimensional scaling (or principle coordinate) plot, in that a distance measure particularly appropriate for the digital gene expression (DGE) context is used. The distance between each pair of samples (columns) is the square root of the common dispersion for the top genes which best distinguish that pair of samples. These top genes are selected according to the tagwise dispersion of all the samples.
Usage
1 | qcMDS()
|
Author(s)
Raffaele A Calogero
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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