templA: Generating a template A to be uploaded in Ingenuity Pathways...
In oneChannelGUI: A graphical interface designed to facilitate analysis of microarrays and miRNA/RNA-seq data on laptops
Description
Usage
Note
Author(s)
See Also
View source: R/dataminingmenu.R
Description
A template A file to be used in Ingenuity can be generated starting from a topTable containing the full
array data.
Usage
1
templA()
Note
Template A file will contain a column with the gene ID, a column with fold change, a column with
true p-value and a column with p-values for discriminating between the set of differentially
expressed probe sets and the background. This coulumn is needed to allow IPA to identify the set
of enriched functional classes associated to the differentially expressed probe sets.
Author(s)
Raffaele A Calogero
See Also
IPAlistFilter
oneChannelGUI documentation built on Nov. 17, 2017, 11:02 a.m.
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Description Usage Note Author(s) See Also
View source: R/dataminingmenu.R
Description
A template A file to be used in Ingenuity can be generated starting from a topTable containing the full array data.
Usage
1 | templA()
|
Note
Template A file will contain a column with the gene ID, a column with fold change, a column with true p-value and a column with p-values for discriminating between the set of differentially expressed probe sets and the background. This coulumn is needed to allow IPA to identify the set of enriched functional classes associated to the differentially expressed probe sets.
Author(s)
Raffaele A Calogero
See Also
IPAlistFilter
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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